SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57303

Length: 371 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57303
ATGGGGTCGTTATTCGGGCCTTGTCCTCTGTTGATCTATAGAAATGGTCGAACAGAGAGATGGCCCAATAATATGAAACACAAGCAACGTTTCGATTCACAGGCGCTCTACAGTCTCAGAAGAAGTTATTGATGGAGTTGAGAAGGCAATAATCGTGTGATTGGTTTCTCCTCTTGCAACCCTGTGTAGTGACAGTAAGTTTGAGGTTCGCAGGATGGGGGGTGCTGAGGTGCTGCCATGGCTGAAGGCATTGCCATTGGGACCAGAGTACCGTCCCACAGAAGCCGAATTCGCTGACCCAATTGGGTACATTTTGAAGATAGAGAAGGAAGCTAGCCAGTACGGCATTTGCAAGATCATTCCTCCAATAC

Ace file of the UniGene sp_v1.1_unigene57303

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Jumonji domain protein n=1 Tax=Populus trichocarpa RepID=B9I3K4_POPTR	-	-	6.0e-16	81%
FL-Next	sp=Probable lysine-specific demethylase ELF6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Blast2go	jumonji domain protein	-	-	1.0996e-15	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone H3-K9 demethylation	GO:0033169	Biological Process	1.0996e-15	82%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.0996e-15	82%
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	1.0996e-15	82%
Blast2go	negative regulation of histone acetylation	GO:0035067	Biological Process	1.0996e-15	82%
Blast2go	negative regulation of short-day photoperiodism, flowering	GO:0048577	Biological Process	1.0996e-15	82%
Blast2go	leaf development	GO:0048366	Biological Process	1.0996e-15	82%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	1.0996e-15	82%
Blast2go	protein binding	GO:0005515	Molecular Function	1.0996e-15	82%
Blast2go	nucleus	GO:0005634	Cellular Component	1.0996e-15	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q6BDA0

Fln msg: Distance to subject end: 1288 aas, your sequence is shorter than subject: 52 - 1340

Fln protein: MGGAEVLPWLKALPLGPEYRPTEAEFADPIGYILKIEKEASQYGICKIIPPI

Protein Length: 53

Fln nts: ATGGGGTCGTTATTCGGGCCTTGTCCTCTGTTGATCTATAGAAATGGTCGAACAGAGAGATGGCCCAATAATATGAAACACAAGCAACGTTTCGATTCACAGGCGCTCTACAGTCTCAGAAGAAGTTATTGATGGAGTTGAGAAGGCAATAATCGTGTGATTGGTTTCTCCTCTTGCAACCCTGTGTAGTGACAGTAAGTTTGAGGTTCGCAGG_-_ATGGGGGGTGCTGAGGTGCTGCCATGGCTGAAGGCATTGCCATTGGGACCAGAGTACCGTCCCACAGAAGCCGAATTCGCTGACCCAATTGGGTACATTTTGAAGATAGAGAAGGAAGCTAGCCAGTACGGCATTTGCAAGATCATTCCTCCAATAC

Fln Alignment:

sp_v1.1_unigene57303___MGGAEVLPWLKALPLGPEYRPTEAEFADPIGYILKIEKEASQYGICKIIPPI
Q6BDA0_______________MGNVEIPNWLKALPLAPVFRPTDTEFADPIAYISKIEKEASAFGICKIIPPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain