SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57226

Length: 288 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57226
GGAAAACTTAACTTGTTGGTGCAATCGTCACTGATTTCCACTGTTTACCAAAAGGGTTTACGCCTTTCAAATTCTGCTCAGCAAAGCCATGGAATTGGGAAAATTGTGAACTATATGTCAGTTGATGTGGAGATAGTGAATCAAATGGTTGGACGTGTTCATGAACTTTGGTCAATGCCAATTCAGATATCCATTGCATTGCTTATTGTCTTTGGCGTGATTCGACTTGCTGCATTGGCTGGCTTGGCTACTATGGTAATTGTGATGGTTATTTGTCTATTCCTAGCC

Ace file of the UniGene sp_v1.1_unigene57226

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 4, SmABCC4 n=2 Tax=Selaginella moellendorffii RepID=D8RHJ5_SELML	-	-	1.0e-23	56%
FL-Next	sp=ABC transporter C family member 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	multidrug resistance protein abc transporter family	-	-	1.86758e-23	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	1.86758e-23	75%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.86758e-23	75%
Blast2go	response to wounding	GO:0009611	Biological Process	1.86758e-23	75%
Blast2go	response to nematode	GO:0009624	Biological Process	1.86758e-23	75%
Blast2go	folic acid transporter activity	GO:0008517	Molecular Function	1.86758e-23	75%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.86758e-23	75%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	1.86758e-23	75%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.86758e-23	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.86758e-23	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	1.86758e-23	75%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	1.86758e-23	75%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	1.86758e-23	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7DM58

Fln msg: Distance to subject end: 1031 aas, your sequence is shorter than subject: 96 - 1516

Fln protein: GKLNLLVQSSLISTVYQKGLRLSNSAQQSHGIGKIVNYMSVDVEIVNQMVGRVHELWSMPIQISIALLIVFGVIRLAALAGLATMVIVMVICLFLA

Protein Length: 97

Fln nts: GGAAAACTTAACTTGTTGGTGCAATCGTCACTGATTTCCACTGTTTACCAAAAGGGTTTACGCCTTTCAAATTCTGCTCAGCAAAGCCATGGAATTGGGAAAATTGTGAACTATATGTCAGTTGATGTGGAGATAGTGAATCAAATGGTTGGACGTGTTCATGAACTTTGGTCAATGCCAATTCAGATATCCATTGCATTGCTTATTGTCTTTGGCGTGATTCGACTTGCTGCATTGGCTGGCTTGGCTACTATGGTAATTGTGATGGTTATTTGTCTATTCCTAGCC

Fln Alignment:

sp_v1.1_unigene57226___KLNLLVQSSLISTVYQKGLRLSNSAQQSHGIGKIVNYMSVDVEIVNQMVGRVHELWSMPIQISIALLIVFGVIRLAALAGLATMVIVMVICL
Q7DM58_______________KLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain