SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57115

Length: 456 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene57115
GTCAGCCATGCACGTTCTAGCATTGGAGGGGCTGATTGCAGTCATTCATAGCATGGCAGACAGAGTCAATGCTGCATCTTCACTTCCTGAACCAACACCAATAAGGGAGATTGAAGAGTATGAGCCTTTCTGGACAGTAACATGTGATAATTATGAAGATCCCACTCATTGGGTGCCATTTGTTCGCCGCAAAAAGTATATCAAAAAGAAGTTGATGATTGGAGCTGATCATTTTAATAGGGATACCAAGAAAGGTCTCGAGTTCTTACAAAGCATTCACCTCCTACCTGAGAAGCTTGATCCCCAAAGTGTTGCTTGCTTTTTTAGATACACATGTGGTCTGGAAAAGCTTCTTGTGGGTGATTTCTTGGGAAATCATGATGAGTTTTGTGTGCGAGTGCTGCAGGAATTTACAAAAATGTTTGATTTTGTTGACATGAATATAGACACAGCACT

Ace file of the UniGene sp_v1.1_unigene57115

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pattern formation protein, putative	-	-	72%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	pattern formation	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	81%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	81%
Blast2go	ER body organization	GO:0080119	Biological Process	81%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	81%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	81%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	81%
Blast2go	cell adhesion	GO:0007155	Biological Process	81%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	81%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	81%
Blast2go	GTP:GDP antiporter activity	GO:0010292	Molecular Function	81%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SEC7-like	IPR000904	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Distance to subject end: 805 aas, your sequence is shorter than subject: 151 - 1451

Fln protein: SAMHVLALEGLIAVIHSMADRVNAASSLPEPTPIREIEEYEPFWTVTCDNYEDPTHWVPFVRRKKYIKKKLMIGADHFNRDTKKGLEFLQSIHLLPEKLDPQSVACFFRYTCGLEKLLVGDFLGNHDEFCVRVLQEFTKMFDFVDMNIDTA

Protein Length: 152

Fln nts: GTCAGCCATGCACGTTCTAGCATTGGAGGGGCTGATTGCAGTCATTCATAGCATGGCAGACAGAGTCAATGCTGCATCTTCACTTCCTGAACCAACACCAATAAGGGAGATTGAAGAGTATGAGCCTTTCTGGACAGTAACATGTGATAATTATGAAGATCCCACTCATTGGGTGCCATTTGTTCGCCGCAAAAAGTATATCAAAAAGAAGTTGATGATTGGAGCTGATCATTTTAATAGGGATACCAAGAAAGGTCTCGAGTTCTTACAAAGCATTCACCTCCTACCTGAGAAGCTTGATCCCCAAAGTGTTGCTTGCTTTTTTAGATACACATGTGGTCTGGAAAAGCTTCTTGTGGGTGATTTCTTGGGAAATCATGATGAGTTTTGTGTGCGAGTGCTGCAGGAATTTACAAAAATGTTTGATTTTGTTGACATGAATATAGACACAGCACT

Fln Alignment:

sp_v1.1_unigene57115___SAMHVLALEGLIAVIHSMADRVNAASSLPEPTPIREIEEYEPFWTVTCDNYEDPTHWVPFVRRKKYIKKKLMIGADHFNRDTKKGLEFLQSIHLLPEKLDPQSVACFFRYTCGLEKLLVGDFLGNHDEFCVRVLQEFTKMFDFVDMNIDTA
Q42510_______________SAMHILALDGLIAVIQGMAERISNGLTGLDLGPVH-LDEYTPFWMVKCDNYSDPNHWVSFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLNEFAGTFDFQYMNLDTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain