SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57066

Length: 515 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene57066

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tir-nbs resistance protein n=1 Tax=Populus trichocarpa RepID=B9GWT3_POPTR	-	-	1.4013e-45	56%
FL-Next	tr=Tir-nbs resistance protein; subsp. trichocarpa).	-	-	0.0	62%
Blast2go	tir-nbs resistance protein	-	-	4.2039e-45	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.2039e-45	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GWT3

Fln msg: Overlapping hits, possible frame ERROR between 133 and 133, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 288 aas, your sequence is shorter than subject: 171 - 1005

Test code: 0

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: *EMEALQRVRKELCGDIPYLLVIDNLESERDWWDSRDLLELLPxxGGTTHVIISTRLSCVMNLDPVRLSYLSSVEAMSLMKGKRRDFSVVELDALRTIEERLGRLTLGLGIVGSILSELPITPSRLLDTINRVSLRDMLWSIREDSTLRSHPFLMQLLDVCFNILDHANNQ

Protein Length: 172

Fln nts: CTAGGAAATGGAAGCCTTGCAGAGAGTGAGAAAGGAGCTCTGTGGGGACATTCCTTACCTTCTTGTGATTGACAATTTGGAGAGTGAGAGAGATTGGTGGGACAGTCGGGACCTTTTGGAGCTTCTTCCAxxxxxxGGTGGAACAACGCATGTGATAATTTCTACTCGACTCTCCTGTGTGATGAATCTAGATCCAGTGAGGCTGTCATACTTATCAAGTGTGGAAGCTATGTCTTTGATGAAGGGAAAGAGGAGGGATTTTTCAGTAGTGGAGCTTGATGCGCTAAGAACAATTGAAGAAAGGTTGGGTCGGTTAACATTAGGCCTCGGGATTGTTGGTTCCATCCTTTCAGAGCTTCCCATTACACCTTCTAGACTCCTTGATACCATTAATAGGGTGTCCTTGAGAGATATGTTATGGAGTATTCGAGAAGATTCAACTTTGAGAAGTCATCCCTTTCTTATGCAGCTTCTGGATGTATGCTTCAACATTCTTGATCATGCAAATAACCAAAG

Fln Alignment:

sp_v1.1_unigene57066___EMEALQRVRKELCGDIPYLLVIDNLESERDWWDSRDLLELLPRFGGTTHVIISTRLSCVMNLDPVRLSYLSSVEAMSLMKGKRRDFSVVELDALRTXXXXXXXXXXXXXXXXSILSELPITPSRLLDTINRVSLRDMLWSIREDSTLRSHPFLMQLLDVCFNILDHAN
B9GWT3_______________EEEAISKVRKELLRNIPFLVVIDNLESEKDWWDHKIVMDLLPRFGGETHIIISTRLPRVMNLEPLKLSYLSAVEAMCLMQGSDKDYSIAEIDALRVIEEKVGRLTLGLAIVGAILSELPINPSRLLDTINRMPLREMSWSGREAHSMRKNTFLLQLFEVCFSIFDHAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain