SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57019

Length: 348 nt

UniGene Fasta

>sp_v1.1_unigene57019
ATGGGCTACCCGATTTAATCAAAATTGAAGCTTCTTCAGACTAAGGCCCTGTGGATGGTATATATCTCCATGTTCATGTCTCGCCTATGGGTGCCGTGTTGGTTTTCCAAGATTATCACGGATCTGTATTAGCATGGCGCTAGTCAATGGGCGACCTCATGCTCTTATGTTTCCTATGGCTGCTCAGGGACATATTCAGGCGATGCTGCAGCTAGCTAAAGTCTTGCACGCTCGAGGCTTCTACATTACCTTGTTAATACAGAGTATATACAACAGCGCCTCCTCACATCCGGATCGGTGCACGCCCTTAATTCTCTGCCGAACTTTAGATTCGAGACTATTCCAGAT

Ace file of the UniGene sp_v1.1_unigene57019

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F3F9.19 n=2 Tax=Arabidopsis RepID=Q9M9E7_ARATH	-	-	2.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	udp-	-	-	4.47699e-18	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	4.47699e-18	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	4.47699e-18	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW4

Fln msg: Overlapping hits, possible frame ERROR between 256 and 253, Distance to subject end: 404 aas, your sequence is shorter than subject: 72 - 476

Fln protein: MALVNGRPHALMFPMAAQGHIQAMLQLAKVLHARGFYITxxxTEYIQQRLLTSGSVHALNSLPNFRFETIPD

Protein Length: 73

Fln nts: ATGGGCTACCCGATTTAATCAAAATTGAAGCTTCTTCAGACTAAGGCCCTGTGGATGGTATATATCTCCATGTTCATGTCTCGCCTATGGGTGCCGTGTTGGTTTTCCAAGATTATCACGGATCTGTATTAGC_-_ATGGCGCTAGTCAATGGGCGACCTCATGCTCTTATGTTTCCTATGGCTGCTCAGGGACATATTCAGGCGATGCTGCAGCTAGCTAAAGTCTTGCACGCTCGAGGCTTCTACATTACCxxxxxxxxxACAGAGTATATACAACAGCGCCTCCTCACATCCGGATCGGTGCACGCCCTTAATTCTCTGCCGAACTTTAGATTCGAGACTATTCCAGAT

Fln Alignment:

sp_v1.1_unigene57019___MALVNGRPHALMFPMAAQGHIQAMLQLAKVLHARGFYITLxNTEYIQQRLLTSGSVHALNSLPNFRFETIPD
B8LQW4_______________MALVNTRPHALMLPFPSQGHIQAMMQLSKLLYARGFYITFxNTEYIQERLEASGSVDSVKSWPDFRFETLPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain