SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene57002

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene57002
TCTCAGATTTAGGAGTATGGTTGGTTGAACTTACATGGTCTTTTTGGGCATATGTTTGGCTTTACATAATAATAGAGGTGTGGACTCCAAATGTGGTGACTATCTGGGAGGCTGGATTGACTATAACACAGTTTGGCTTACTAATGTTACATGCATATGGACAAGACAGAGGGTGGCGCTGTGTTGCGATTCCCTTGCCAAGACAAGAGAGGCCAGCAGCTTGGGTGCCTGTTGATACTACATATGGTTGCAGCCAAGATGGAAATCATGAAA

Ace file of the UniGene sp_v1.1_unigene57002 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	magnesium/proton exchanger, putative	-	-	2.0e-29	62%
FL-Next	tr=Magnesium/proton exchanger, putative, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Blast2go	magnesium proton exchanger	-	-	7.68483e-30	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	7.68483e-30	80%
Blast2go	zinc ion transport	GO:0006829	Biological Process	7.68483e-30	80%
Blast2go	iron ion transport	GO:0006826	Biological Process	7.68483e-30	80%
Blast2go	cation:cation antiporter activity	GO:0015491	Molecular Function	7.68483e-30	80%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	7.68483e-30	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sodium/calcium exchanger membrane region	IPR004837	-	7.68483e-30	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2R040

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 90 - 434

Fln protein: SDLGVWLVELTWSFWAYVWLYIIIEVWTPNVVTIWEAGLTITQFGLLMLHAYGQDRGWRCVAIPLPRQERPAAWVPVDTTYGCSQDGNHE

Protein Length: 91

Fln nts: TCTCAGATTTAGGAGTATGGTTGGTTGAACTTACATGGTCTTTTTGGGCATATGTTTGGCTTTACATAATAATAGAGGTGTGGACTCCAAATGTGGTGACTATCTGGGAGGCTGGATTGACTATAACACAGTTTGGCTTACTAATGTTACATGCATATGGACAAGACAGAGGGTGGCGCTGTGTTGCGATTCCCTTGCCAAGACAAGAGAGGCCAGCAGCTTGGGTGCCTGTTGATACTACATATGGTTGCAGCCAAGATGGAAATCATGAAA

Fln Alignment:

sp_v1.1_unigene57002___SDLGVWLVELTWSFWAYVWLYIIIEVWTPNVVTIWEAGLTITQFGLLMLHAYGQDRGWRCVAIPLPRQERPAAWVPVD
Q2R040_______________SDLGVWLVELFWSFWAYIWLYIILEVWTPRVITLWEALLTVLQYGLLLLHAYAQDKRWPYVSIPLARGERPEDWVPAE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain