SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56920

Length: 485 nt

UniGene Fasta

>sp_v1.1_unigene56920
ATGGGGGTGGTAGTAATTGCCGGATTAGGCGGAATAGGGAAGTCAACTCTGGCGAGACATATCTTCAACGAATTGAGCCGTTCGGAATTTAGAAGGGCTTCTTATTTGTTTAACGTCAGAGAAACAGATGATCATGATTTGCAGCGGCAGCTCTGTCGTGATCTGCTGGGCAAAAATATGTTACCTGGCTGGGAGGAGAAGACTGTGTTACGAAAGAGTCTAAAAGGATTAAAAGTTTTGATTGTTTTCGATGATGTGGATGACAGGCACAAAATAGAACGTGTACTGGATGTACATGCTGTGGAAGAGGGTAGTCTGATCTTCGTAACATCTCGTGATAAAGATGTAGTGAGGGCCTCTTATGCAAACACTTCATTCGTGTATGATGTACAGCCATTGAAGAACAAACATGCCCGAGAATTGTTCTACTATCATGCCACCCGTCAATCAAATTCACTTGAAGGGTGTGCAGATTTGGTGGAGGA

Ace file of the UniGene sp_v1.1_unigene56920

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J1_PINTA	-	-	2.0e-13	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	nucleotide binding site protein	-	-	7.86333e-14	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	7.86333e-14	54%
Blast2go	NB-ARC	IPR002182	-	7.86333e-14	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPT1

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 161 - 258

Fln protein: MGVVVIAGLGGIGKSTLARHIFNELSRSEFRRASYLFNVRETDDHDLQRQLCRDLLGKNMLPGWEEKTVLRKSLKGLKVLIVFDDVDDRHKIERVLDVHAVEEGSLIFVTSRDKDVVRASYANTSFVYDVQPLKNKHARELFYYHATRQSNSLEGCADLVE

Protein Length: 162

Fln nts: ATGGGGGTGGTAGTAATTGCCGGATTAGGCGGAATAGGGAAGTCAACTCTGGCGAGACATATCTTCAACGAATTGAGCCGTTCGGAATTTAGAAGGGCTTCTTATTTGTTTAACGTCAGAGAAACAGATGATCATGATTTGCAGCGGCAGCTCTGTCGTGATCTGCTGGGCAAAAATATGTTACCTGGCTGGGAGGAGAAGACTGTGTTACGAAAGAGTCTAAAAGGATTAAAAGTTTTGATTGTTTTCGATGATGTGGATGACAGGCACAAAATAGAACGTGTACTGGATGTACATGCTGTGGAAGAGGGTAGTCTGATCTTCGTAACATCTCGTGATAAAGATGTAGTGAGGGCCTCTTATGCAAACACTTCATTCGTGTATGATGTACAGCCATTGAAGAACAAACATGCCCGAGAATTGTTCTACTATCATGCCACCCGTCAATCAAATTCACTTGAAGGGTGTGCAGATTTGGTGGAGGA

Fln Alignment:

sp_v1.1_unigene56920___KSTLARHIFNELSRSEFRRASYLFNVRETDDHD-------LQRQLCRDLLG--KNMLPGWEEKTVLRKSLKGLKVLIVFDDVDDRHKIERVLDV--HAVEEGSLIFVTSRDKDVVRASYANTSFVYDVQPLKNKHARELFYYHATRQSNSLEGCADLVE
B8LPT1_______________KTTMAKEFFNR-KKTDYNTSCFLSDVR---DHAATRSLNLLQSQLHKSLTGMDRNIDSVDQGKGMLMESLKSSKALIILDDVDHVDQVKALLPVQTHDLDSRSLILITSRDKGVLRGSKVDESSIYTLTGLNEQHSLELFCSHAFSQAYPLAGFERLVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain