SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56731

Length: 505 nt

UniGene Fasta

>sp_v1.1_unigene56731
CACCGGCACCATAACCAGCAGGTGAAGCACTCAGGTTCCGTCAACTGCCTTGCCTATAATGTCACGATGATTTGCTGTACTCGGCGTCGTCGGATAAAAGACGTGAAGGTGTGGAAGTTGTCGGAGTCGAAGTGCATCGAGACTATCGAAGCCCACACCGAGGCCGTCAATGCGGTCGTCGTGCTGGGCGACGGGCTTCTCTTCACTGCATCCGACGACAGCACAGTGAAGGTATGGCGGCAGCCGGGTCGTGACCGACCTAAACACCAGCTAATCATGACTCTTAACGTGCAACGTTCTCCCGTGAAAGCCCTCGCCCTTGGGCTGTACGGGTTGCCCGTTGTACACGCGGGATGCTACGATGGATATATTCATTACTGGGAGGAAGACCATCTCTCCGACCGAATACTGCATTACTCCGGTTTCCTTCGCGGCCACCTTCACTCCGTTCTCTGTCTCGAGGCCGTTCGCGATCTGCTGTTCAGTGGCTCGGCTGATACAACGA

Ace file of the UniGene sp_v1.1_unigene56731

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box and wd40 domain protein, putative (EC:2.7.11.7)	-	-	7.0e-32	45%
FL-Next	sp=Lissencephaly-1 homolog; Phaeodactylum tricornutum (strain CCAP 1055/1).	-	-	0.0	29%
Blast2go	f-box and wd40 domain	-	-	4.27523e-36	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40 repeat	IPR001680	-	4.27523e-36	61%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	4.27523e-36	61%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	4.27523e-36	61%
Blast2go	WD40-repeat-containing domain	IPR017986	-	4.27523e-36	61%
Blast2go	WD40 repeat, subgroup	IPR019781	-	4.27523e-36	61%
Blast2go	WD40 repeat 2	IPR019782	-	4.27523e-36	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B7FNU7

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 168 - 439

Fln protein: HRHHNQQVKHSGSVNCLAYNVTMICCTRRRRIKDVKVWKLSESKCIETIEAHTEAVNAVVVLGDGLLFTASDDSTVKVWRQPGRDRPKHQLIMTLNVQRSPVKALALGLYGLPVVHAGCYDGYIHYWEEDHLSDRILHYSGFLRGHLHSVLCLEAVRDLLFSGSADTT

Protein Length: 169

Fln nts: CACCGGCACCATAACCAGCAGGTGAAGCACTCAGGTTCCGTCAACTGCCTTGCCTATAATGTCACGATGATTTGCTGTACTCGGCGTCGTCGGATAAAAGACGTGAAGGTGTGGAAGTTGTCGGAGTCGAAGTGCATCGAGACTATCGAAGCCCACACCGAGGCCGTCAATGCGGTCGTCGTGCTGGGCGACGGGCTTCTCTTCACTGCATCCGACGACAGCACAGTGAAGGTATGGCGGCAGCCGGGTCGTGACCGACCTAAACACCAGCTAATCATGACTCTTAACGTGCAACGTTCTCCCGTGAAAGCCCTCGCCCTTGGGCTGTACGGGTTGCCCGTTGTACACGCGGGATGCTACGATGGATATATTCATTACTGGGAGGAAGACCATCTCTCCGACCGAATACTGCATTACTCCGGTTTCCTTCGCGGCCACCTTCACTCCGTTCTCTGTCTCGAGGCCGTTCGCGATCTGCTGTTCAGTGGCTCGGCTGATACAACGA

Fln Alignment:

sp_v1.1_unigene56731___HSGSVNCLAYNVTMICCTRRRRIKDVKVWKLSESKCIETIEAHTEAVNAVVVL---GDGL-------LFTASDDSTVKVWRQPGRDRPKHQLIMTLNVQRSPVKALALGLYGLPVVHAGCYDGYIHYWEEDHLSDRILHYSGFLRGH---LHSVLCL-----------------EAVRDLLFSGSADTT
B7FNU7_______________HTNTVNGLAFTPTGSHLASCSTDLSIKLWDFQTYACIKTLRGHDHTISSVVFLPFGGDLLTTTKCKRLLSASRDCTVKVW-----DLETGFCDQTIHDHNDWVRTLATRADGSVWASAG-NDTVIYVYEQDRMKKAV-----ELRGHEQVVESIAFLTQDTIPKNNAQRPSKHIETVRDYLVSGSRDRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain