SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56724

Length: 314 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56724
CGTCGTGACCTTGGCTGTCACTCAGGATTGTCTTCCTGTGCAGTGGATGGTTGTGATGGTAAGGTTATGAGGGATGAGAGAGGAGAGGATATCCTTCCTTGCGACTGTAATTATAAGATTTGCAGAGATTGCTACTTTGATGTCCAGAAGGATGGAGGAACTTGTCCAGGATGTAAGGAGCCTTATAAAGTTGGGGACTTAGAGCCAGAGGAAGAGAAAAATGAAGCTTTTCAGAATAGTCTGCCGCCTCTTCCTCCCCCTCCTGGTGGCAATAAACTTGAGAAAAGGATGTCATTGATAGAAGTCAAGCAAAT

Ace file of the UniGene sp_v1.1_unigene56724 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cellulose synthase (EC:2.4.1.12)	-	-	3.0e-23	73%
FL-Next	sp=Cellulose synthase-like protein D3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	cazy family gt2	-	-	6.89234e-23	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	6.89234e-23	73%
Blast2go	response to cold	GO:0009409	Biological Process	6.89234e-23	73%
Blast2go	pollen germination	GO:0009846	Biological Process	6.89234e-23	73%
Blast2go	transferase activity	GO:0016740	Molecular Function	6.89234e-23	73%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	6.89234e-23	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.89234e-23	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	6.89234e-23	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M9M4

Fln msg: Distance to subject end: 926 aas, your sequence is shorter than subject: 104 - 1145

Fln protein: RRDLGCHSGLSSCAVDGCDGKVMRDERGEDILPCDCNYKICRDCYFDVQKDGGTCPGCKEPYKVGDLEPEEEKNEAFQNSLPPLPPPPGGNKLEKRMSLIEVKQ

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTGTCTTCCTGTGCAGTGGATGGTTGTGATGGTAAGGTTATGAGGGATGAGAGAGGAGAGGATATCCTTCCTTGCGACTGTAATTATAAGATTTGCAGAGATTGCTACTTTGATGTCCAGAAGGATGGAGGAACTTGTCCAGGATGTAAGGAGCCTTATAAAGTTGGGGACTTAGAGCCAGAGGAAGAGAAAAATGAAGCTTTTCAGAATAGTCTGCCGCCTCTTCCTCCCCCTCCTGGTGGCAATAAACTTGAGAAAAGGATGTCATTGATAGAAGTCAAGCAAAT

Fln Alignment:

sp_v1.1_unigene56724___SSCAVDGCDGKVMRDERGEDILPCDCNYKICRDCYFDVQKDGGTCPGCKEPYKVGDLEPEEEKNEAFQNSXXXXXXXPGGNKLEKRMSLIE
Q9M9M4_______________SSCAVPGCDVKVMSDERGQDLLPCECDFKICRDCFMDAVKTGGMCPGCKEPYRNTDLADFADNN---KQQRPMLPPPAGGSKMDRRLSLMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain