SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56671

Length: 343 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene56671
TACATTAAAACTATCAAGGCCAACTTTAGCGTTCATCAACAATGCACTTAGCGTGTTGTGTTCAGGTGACGATAAACACATAGACGCTTTAAAGGTGTATCTGCTTTCTAGGGATCATTCAGACCTGAAGCTACAGTTTCTATCTGCCAACGGCAAGGTAAAGATAGCCTGCATTGAAGGTCAACCACCTCTTGATATTAAACTCCGTGAGCATTTGTATCTGTCGGTTGGAGATTATTACCTCAGTATGAGAACATGATGATGAGAGCTTCATCTCCTTCCAACTCAAAGTGTAATCCAAACTTTATAGCTAATGACAAATTTTAACTTTGGAAGAAAGTAA

Ace file of the UniGene sp_v1.1_unigene56671

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isoleucyl tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SUT5_RICCO	-	-	1.0e-15	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%
Blast2go	isoleucyl trna	-	-	4.94177e-16	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HYQ5

Fln msg: your sequence is shorter than subject: 86 - 1183

Fln protein: TLKLSRPTLAFINNALSVLCSGDDKHIDALKVYLLSRDHSDLKLQFLSANGKVKIACIEGQPPLDIKLREHLYLSVGDYYLSMRT*

Protein Length: 87

Fln nts: TACATTAAAACTATCAAGGCCAACTTTAGCGTTCATCAACAATGCACTTAGCGTGTTGTGTTCAGGTGACGATAAACACATAGACGCTTTAAAGGTGTATCTGCTTTCTAGGGATCATTCAGACCTGAAGCTACAGTTTCTATCTGCCAACGGCAAGGTAAAGATAGCCTGCATTGAAGGTCAACCACCTCTTGATATTAAACTCCGTGAGCATTTGTATCTGTCGGTTGGAGATTATTACCTCAGTATGAGAACATGA___TGATGAGAGCTTCATCTCCTTCCAACTCAAAGTGTAATCCAAACTTTATAGCTAATGACAAATTTTAACTTTGGAAGAAAGTAA

Fln Alignment:

sp_v1.1_unigene56671___LKLSRPTLAFINNALSVLCSGDDKHIDALKVYLLSRDHSDLKLQFLSANGKVKIACIEGQPPLDIKLREHLYLSVGDYYLSMRT
F6HYQ5_______________IRLARPTLVFNTNAVLALYSGNTKFAQGLQAYLFSRDHYNLKSEFQLGNSKIKVDCIENQPAVDVVLGKHVLLTVGDYYSSEKT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
154		75		25	0.996483
155			75	25	0.996483
158	75		25		0.996477
159	75		25		0.996477
161			75	25	0.996481

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain