SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56569

Length: 560 nt

UniGene Fasta

>sp_v1.1_unigene56569
CGTCGTGACCTTGGCTGTCACTCATCGGTTTTCCACCAAGAAGAAGTCTCATGGCTGGTGTGACTTTACGCCCAGCTCGACAGTCCTGGATCCCAAGGCTGGCTTTCTGGTGAATGATAGCGTCGTTGTCTTGGCGGAGATTCTTGTCCTGCACGAGTCTGTGTCGTTCTCTAGGGAGAATGAATTGCAGCCGATCGCTGGCCCCATGCCAGAGGTCCTGAGTGGAAAGTTCTTGTGGAAGGTGCATAATTTGTCCCTGTTCAAGGAGATGATCAAGACGCAGAAGATCATGAGCCCTGTGTTTCCAGCTGGGGAATGCAATCTGCGGCTGAGCGTGTACCAGTCGTCTGTTAATGGCATTGATTATCTTTCGATGTGCTTGGAGAGCAAAGATACCGATAAGTCCGTTGTTACAGAACGGAGCTGTTGGTGTCTCTTTCGCATGTCTGTTCTGAATCAGCGAGCTGGGATGAACCATATGCATCGGGATTCCTATGGCCGATTCGCAGGGGACAATAAGAGTGGTGACAATACGAGCCTTGGATGGAACGATTACATAG

Ace file of the UniGene sp_v1.1_unigene56569

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	-	-	64%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	34%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	MATH	IPR002083	-	77%
Blast2go	TRAF-like	IPR008974	-	77%
Blast2go	TRAF-type	IPR013322	-	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SU81

Fln msg: Distance to subject end: 1045 aas, your sequence is shorter than subject: 186 - 1677

Fln protein: VVTLAVTHRFSTKKKSHGWCDFTPSSTVLDPKAGFLVNDSVVVLAEILVLHESVSFSRENELQPIAGPMPEVLSGKFLWKVHNLSLFKEMIKTQKIMSPVFPAGECNLRLSVYQSSVNGIDYLSMCLESKDTDKSVVTERSCWCLFRMSVLNQRAGMNHMHRDSYGRFAGDNKSGDNTSLGWNDYI

Protein Length: 187

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGGTTTTCCACCAAGAAGAAGTCTCATGGCTGGTGTGACTTTACGCCCAGCTCGACAGTCCTGGATCCCAAGGCTGGCTTTCTGGTGAATGATAGCGTCGTTGTCTTGGCGGAGATTCTTGTCCTGCACGAGTCTGTGTCGTTCTCTAGGGAGAATGAATTGCAGCCGATCGCTGGCCCCATGCCAGAGGTCCTGAGTGGAAAGTTCTTGTGGAAGGTGCATAATTTGTCCCTGTTCAAGGAGATGATCAAGACGCAGAAGATCATGAGCCCTGTGTTTCCAGCTGGGGAATGCAATCTGCGGCTGAGCGTGTACCAGTCGTCTGTTAATGGCATTGATTATCTTTCGATGTGCTTGGAGAGCAAAGATACCGATAAGTCCGTTGTTACAGAACGGAGCTGTTGGTGTCTCTTTCGCATGTCTGTTCTGAATCAGCGAGCTGGGATGAACCATATGCATCGGGATTCCTATGGCCGATTCGCAGGGGACAATAAGAGTGGTGACAATACGAGCCTTGGATGGAACGATTACATAG

Fln Alignment:

sp_v1.1_unigene56569___VTLAVTHRFSTKKKSHGWCDFTPSSTVLDPKAGFLVNDSVVVLAEILVLHESVSFSRENELQPIAGPMPE-------VLSGKFLWKVHNLSLFKEMIKTQKIMSPVFPAGECNLRLSVYQSSVNGIDYLSMCLESKDTDKSVVT--ERSCWCLFRMSVLNQRAGMNHMHRDS
A9SU81_______________VTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDMVVFSAEVLILKETSTMQELSEYEGEAAASGGGSDTGRIVNRGTFTWRVENFLAFKEIMETRKIFSKFFQAGGCELRIGVYES----FDTLCIYLES---DQSIGSDPDRNFWVRYRMAVVNVKHGDRTVWKES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain