SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56566

Length: 836 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene56566 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rac-like GTP-binding protein 7 n=4 Tax=Spermatophyta RepID=RAC7_ORYSJ	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	rop-family small gtpase	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	94%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	94%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	94%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	94%
Blast2go	Small GTP-binding protein domain	IPR005225	-	94%
Blast2go	Ras	IPR013753	-	94%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
678	16	83			0.999991
721		14		85	0.993533
729		14		85	0.993533
765		28		71	1.0
767	14	14		71	0.984337
768	14			85	0.993533
779	80	20			0.995493
780		20	80		0.995493
783		80		20	0.995493
803		33		66	0.997452
804		33		66	0.997452
805	33	66			0.997476
806	33	66			0.997471
808		33	33	33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain