SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56548

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56548
GGGATNAGGGCATTTTCACTTCAATTGCATGAGAGAATATTATCACATCGCACCTACAATTGAACACTANGTATGCATGGTTGACCTTCTCGGCCGTGCTGGGCGTCTTGATGAAGCAGAAGACTTAATCATTGGGATGCCAATAAAACCAGATGCTGTTGTGTGGATTTGTTTGCTGAGTGCTTGTAGAATACATAACAACTTACATCTAGCTAAAAGAGTGGCAGAACATATTTTTGAATTGGACCCTGAAAACACAGCACCTTATGTCCTTCTGTCAAATATGTATGCTACACTTGGCAGGTGGGGTGACATTGAAAAGGTACGAAAATTGATGAGAAACAGAGGCATAAACAAGACACCTGGTTGCAGTTGGATTGAGGTCAATAAACAAGTGCATGCTTTCCTTGAAGGAGACACATCACACCAACAAATGCAGAAAATCTACAGAGTTGGGGAGACTAACTTGGGAGATGAAAGAAACGGTGTATGTTCCAGATAAAAGGTTTGTATTGAATGATACCAGGGAGGACAAGAAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene56548 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	7.00649e-45	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	7.00649e-45	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 67 aas, your sequence is shorter than subject: 167 - 312

Fln protein: G*GHFHFNCMREYYHIAPTIEHYVCMVDLLGRAGRLDEAEDLIIGMPIKPDAVVWICLLSACRIHNNLHLAKRVAEHIFELDPENTAPYVLLSNMYATLGRWGDIEKVRKLMRNRGINKTPGCSWIEVNKQVHAFLEGDTSHQQMQKIYRVGETNLGDERNGVCSR*

Protein Length: 168

Fln nts: GGGATgAGGGCATTTTCACTTCAATTGCATGAGAGAATATTATCACATCGCACCTACAATTGAACACTAtGTATGCATGGTTGACCTTCTCGGCCGTGCTGGGCGTCTTGATGAAGCAGAAGACTTAATCATTGGGATGCCAATAAAACCAGATGCTGTTGTGTGGATTTGTTTGCTGAGTGCTTGTAGAATACATAACAACTTACATCTAGCTAAAAGAGTGGCAGAACATATTTTTGAATTGGACCCTGAAAACACAGCACCTTATGTCCTTCTGTCAAATATGTATGCTACACTTGGCAGGTGGGGTGACATTGAAAAGGTACGAAAATTGATGAGAAACAGAGGCATAAACAAGACACCTGGTTGCAGTTGGATTGAGGTCAATAAACAAGTGCATGCTTTCCTTGAAGGAGACACATCACACCAACAAATGCAGAAAATCTACAGAGTTGGGGAGACTAACTTGGGAGATGAAAGAAACGGTGTATGTTCCAGATAAAAGGTTTGTATTGAATGATACCAGGGAGGACAAGAAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene56548___FNCMREYYHIAPTIEHYVCMVDLLGRAGRLDEAEDLIIGMPIKPDAVVWICLLSACRIHNNLHLAKRVAEHIFELDPENTAPYVLLSNMYATLGRWGDIEKVRKLMRNRGINKTPGCSWIEVNKQVHAFLEGDTSHQQMQKIYRVGET
D5ADG9_______________YNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain