SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56395

Length: 344 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56395
CGTCGTGACCTTGGCTGTCACTCAAGTTGACAGAACTTCAAGTGCTAAACACGGAAAAATGCTGTTCGTTAAAGGAACTTCCAGGTCTGGAACATTTGACTTTGTTGAGGGAGCTTAAAGCCAGTGGGTGTCGGAAAGTGCGGAGCATAGTGGGATTGGCGCAGCTGCCAAAACTGGATGTGCTAGACATGGAAGATTGCTATGAGCTGGAAGAAATTCCGGGTCTCGAACATTTGACATCATTGAGGAGGCTTAATGCCAGTGGCTGTGGGAAATTGCAGAGCATAGAGGGGTTGGTGCAGCTGACACGACTTGAAGAACTAAACGTGGCGAACTGCTGCCTG

Ace file of the UniGene sp_v1.1_unigene56395 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nbi-D protein n=4 Tax=Linum usitatissimum RepID=Q9ARB0_LINUS	-	-	2.0e-14	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	tir-nbs-lrr protein	-	-	3.76627e-32	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	3.76627e-32	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMG9

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 112 - 155

Fln protein: PWLSLKLTELQVLNTEKCCSLKELPGLEHLTLLRELKASGCRKVRSIVGLAQLPKLDVLDMEDCYELEEIPGLEHLTSLRRLNASGCGKLQSIEGLVQLTRLEELNVANCCL

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTGACAGAACTTCAAGTGCTAAACACGGAAAAATGCTGTTCGTTAAAGGAACTTCCAGGTCTGGAACATTTGACTTTGTTGAGGGAGCTTAAAGCCAGTGGGTGTCGGAAAGTGCGGAGCATAGTGGGATTGGCGCAGCTGCCAAAACTGGATGTGCTAGACATGGAAGATTGCTATGAGCTGGAAGAAATTCCGGGTCTCGAACATTTGACATCATTGAGGAGGCTTAATGCCAGTGGCTGTGGGAAATTGCAGAGCATAGAGGGGTTGGTGCAGCTGACACGACTTGAAGAACTAAACGTGGCGAACTGCTGCCTG

Fln Alignment:

sp_v1.1_unigene56395___LKLTELQVLNTEKCCSLKELPGLEHLTLLRELKASGCRKVRSIVGLAQLPKLDVLDMEDCYELEEIPGLEHLTSLRRLNASGCGKLQSIEGLVQLTRLEELNVAN
B8LMG9_______________VQLTELRELNVANLSELKELPGLEHLTSLRKLNASGCGKLQSIEGLAQLTGLEVLNVANCCELKELPGLEHLKRLRELNASGCGKLQSIEGLVQLTGLRELNVAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain