SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56392

Length: 448 nt

UniGene Fasta

>sp_v1.1_unigene56392
CGTCGTGACCTTGGCTGTCACTCAACTTCAAAGATTTTGGAACCCTGTCAATCAAGTCTTGCTTATCAACCTCCAAATCCTTGGACAATGGGCATCCTTAGTTTACTATCTGAGATCTATGCATTGCCGAATTTGAAGATGAATCTGAGGTTTGATATTGAGGTATTATTTAAAAATCTGGGAGTAGATACAAAAGATGTGAAGCCTACTCAACTTCTCAAGGGTCGTGCTAGAGAGGTTGAAGGAAACCCTGATTTTTCCAATAAAGATTTAGGAACTGCTCAACAGCAAGTCATAACTGAGCATACCCCTGGAACGATAGTTCCAATTAGCCAGGTGGAACTGCAGCCTGCAGTGTCTACTTCTCATGCCAGTACTCCTCATCCACCTGTATTAAATCAGTTTACAGGTGCCCTGCATCTTTCATCAAGTACAGTAGGAGAGGAAG

Ace file of the UniGene sp_v1.1_unigene56392

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcriptional regulator-related; K12604 CCR4-NOT transcription complex subunit 1	-	-	4.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%
Blast2go	ccr4-not transcription complex subunit 1	-	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CA59

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 149 - 540

Fln protein: RRDLGCHSTSKILEPCQSSLAYQPPNPWTMGILSLLSEIYALPNLKMNLRFDIEVLFKNLGVDTKDVKPTQLLKGRAREVEGNPDFSNKDLGTAQQQVITEHTPGTIVPISQVELQPAVSTSHASTPHPPVLNQFTGALHLSSSTVGEE

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCAAAGATTTTGGAACCCTGTCAATCAAGTCTTGCTTATCAACCTCCAAATCCTTGGACAATGGGCATCCTTAGTTTACTATCTGAGATCTATGCATTGCCGAATTTGAAGATGAATCTGAGGTTTGATATTGAGGTATTATTTAAAAATCTGGGAGTAGATACAAAAGATGTGAAGCCTACTCAACTTCTCAAGGGTCGTGCTAGAGAGGTTGAAGGAAACCCTGATTTTTCCAATAAAGATTTAGGAACTGCTCAACAGCAAGTCATAACTGAGCATACCCCTGGAACGATAGTTCCAATTAGCCAGGTGGAACTGCAGCCTGCAGTGTCTACTTCTCATGCCAGTACTCCTCATCCACCTGTATTAAATCAGTTTACAGGTGCCCTGCATCTTTCATCAAGTACAGTAGGAGAGGAAG

Fln Alignment:

sp_v1.1_unigene56392___TSKILEPCQSSLAYQPPNPWTMGILSLLSEIYALPNLKMNLRFDIEVLFKNLGVDTKDVKPTQLLKGRAREVEGNPDFSNKDLGTAQQQVITEHTPGTIVPISQVELQPAVSTSHASTPHPPVLNQFTGALHLSSSTVGEE
A5CA59_______________TSKILEPCQSSLAYRPPNPWTMAILGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVREIEGNPDFSNKDVGASQPQMVSDINPGIMSTLSQVELQPDIVNSSHPGGHLNVMTQYPSGLHLASGSLTED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain