SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56381

Length: 431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56381
GCCTCTCTCAGAAAGATTCCCGTCTTATGCCGGACCTCGAACAGGCCTATTTAGCTATGCTCAAAGCTTCAAATGGTTGTCCTAGTGTTCAACGTGTTGCTGCTGAGCTTATTCCTCGATATGCTTTATATTGTCCAACTGCCCTTGAAGCTGCTTGCAGAGTAACCATGCAAATTGGTAACTGGAGCTCGTCTGTGGCATTGCAGGGGGAAGACAGTGATGACATAGCTTTTGAGACAGCAAAGGCCTGCCTTTTTGGGCTGGTAGATATCTCATGTGCTGCTACTTCGATGACTTCAAACAAATCCGTTGCTAGCAGCATTTGTTCAGTTGTTTTCAGGAGTGTATTGTCATTCTTCATTCACCAACTCGATGGCAAGGGACTATACAATTTTGAAGACATTGAAGTTGAAAAATTGCATGGCTCAAAA

Ace file of the UniGene sp_v1.1_unigene56381 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding	-	-	8.0e-29	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Blast2go	nucleic acid binding	-	-	1.89609e-36	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GZM6

Fln msg: Distance to subject end: 1120 aas, your sequence is shorter than subject: 143 - 1331

Fln protein: LSQKDSRLMPDLEQAYLAMLKASNGCPSVQRVAAELIPRYALYCPTALEAACRVTMQIGNWSSSVALQGEDSDDIAFETAKACLFGLVDISCAATSMTSNKSVASSICSVVFRSVLSFFIHQLDGKGLYNFEDIEVEKLHGSK

Protein Length: 144

Fln nts: GCCTCTCTCAGAAAGATTCCCGTCTTATGCCGGACCTCGAACAGGCCTATTTAGCTATGCTCAAAGCTTCAAATGGTTGTCCTAGTGTTCAACGTGTTGCTGCTGAGCTTATTCCTCGATATGCTTTATATTGTCCAACTGCCCTTGAAGCTGCTTGCAGAGTAACCATGCAAATTGGTAACTGGAGCTCGTCTGTGGCATTGCAGGGGGAAGACAGTGATGACATAGCTTTTGAGACAGCAAAGGCCTGCCTTTTTGGGCTGGTAGATATCTCATGTGCTGCTACTTCGATGACTTCAAACAAATCCGTTGCTAGCAGCATTTGTTCAGTTGTTTTCAGGAGTGTATTGTCATTCTTCATTCACCAACTCGATGGCAAGGGACTATACAATTTTGAAGACATTGAAGTTGAAAAATTGCATGGCTCAAAA

Fln Alignment:

sp_v1.1_unigene56381___LSQKDSRLMPDLEQAYLAMLKASNGCPSVQRVAAELIPRYALYCPTALEAACRVTMQIGNWSSSVALQGEDSDDIAFETAKACLFGLVDISCAATSMTSNKSVASSICSVVFRSVLSFFIHQLDGKGLYNFEDIEVEKLHGS
F6GZM6_______________IAHEDARLMPELEQAYLSLITASRGCTSAQRIVADFVPRYASYCPTALEAAAKVVINMHKWSLTTINRGEDSNGVAFETAKACIFGLGDICSAAASEAPTSSVIRGICSAVFLNVLTFFLSSFEGKDIFQIVDKETLKIHDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain