SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56326

Length: 257 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene56326
ATGGGGAAAAGATAAAGTCAAAGGTTCTGGGCAGGCTGAGGCAGGTGTTCCATCTGTTGATCTTGGTAGGGTGCCTGATGTAAGCAAGCCACATGACGGGCTAGGTAAATCTGCCAAGGGTCATAAGAAGATTCCTCATAGCTTTACCCAAGTTATAGATCAACTTTTGGAGGTAATATTGCACTATCCACCACCAACACAGGAGGATGAATGCACAGGTTCAACAACAGCCATGGAGGTTGATGAATCTGCTAACC

Ace file of the UniGene sp_v1.1_unigene56326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin protein ligase upl2, putative n=1 Tax=Ricinus communis RepID=B9S9V5_RICCO	-	-	9.0e-14	51%
FL-Next	sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%
Blast2go	e3 ubiquitin protein ligase	-	-	1.7566e-13	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H0T4

Fln msg: Distance to subject end: 1881 aas, your sequence is shorter than subject: 85 - 3658

Fln protein: WGKDKVKGSGQAEAGVPSVDLGRVPDVSKPHDGLGKSAKGHKKIPHSFTQVIDQLLEVILHYPPPTQEDECTGSTTAMEVDESAN

Protein Length: 86

Fln nts: ATGGGGAAAAGATAAAGTCAAAGGTTCTGGGCAGGCTGAGGCAGGTGTTCCATCTGTTGATCTTGGTAGGGTGCCTGATGTAAGCAAGCCACATGACGGGCTAGGTAAATCTGCCAAGGGTCATAAGAAGATTCCTCATAGCTTTACCCAAGTTATAGATCAACTTTTGGAGGTAATATTGCACTATCCACCACCAACACAGGAGGATGAATGCACAGGTTCAACAACAGCCATGGAGGTTGATGAATCTGCTAACC

Fln Alignment:

sp_v1.1_unigene56326___KDKVKGSGQAEAGVPSVDLGRVPDVSKPHDGLGKSAKGHKKIPHSFTQVIDQLLEVILHYPPPTQEDECTGSTTAMEVDE
Q8H0T4_______________KEKPKVSGSEHGFSLNEPLGI--SENKLHDGSGKCSKSHRRVPTNFIQVIDQLIDIVLSFPGLKRQEGEAANLISMDVDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain