SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56197

Length: 384 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene56197
ATGGGCAATCCCGAACAAAATGGAGTTATAGAAAGGAAAAATAGAACACTTGAAGAATGTATACGAACAATGATTTTTTATCAAGATATTCCTAAATTTCTATGGGGAGAAGCTAGAATGACTGTTGTATATATACAAAATAGAAGTCCTCGTAGAATCCTCAATAATCTGACACTCGAAGAAGCATTCATAGGAAGGAAGCCATGTGTTGACCATCTCTGAATCTTTGGATGCCCCTCCTATATCCATGTTCCAAAGGACAAACGAAATAAGGTAGATTCTACAAGCATTAAAGGGATTTTCGTTGGCTACAGTCTTTCTTCAAAGGCATATAGAATCTACATCAAGGAAGGAAGACATATTGAAGTAAGCAGGGACGTTATA

Ace file of the UniGene sp_v1.1_unigene56197

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	0.0001	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	retroelement pol polyprotein	-	-	5.51044e-28	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	5.51044e-28	65%
Blast2go	Ribonuclease H-like domain	IPR012337	-	5.51044e-28	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 128 - 407

Fln protein: MGNPEQNGVIERKNRTLEECIRTMIFYQDIPKFLWGEARMTVVYIQNRSPRRILNNLTLEEAFIGRKPCVDHL*IFGCPSYIHVPKDKRNKVDSTSIKGIFVGYSLSSKAYRIYIKEGRHIEVSRDVI

Protein Length: 129

Fln nts: ATGGGCAATCCCGAACAAAATGGAGTTATAGAAAGGAAAAATAGAACACTTGAAGAATGTATACGAACAATGATTTTTTATCAAGATATTCCTAAATTTCTATGGGGAGAAGCTAGAATGACTGTTGTATATATACAAAATAGAAGTCCTCGTAGAATCCTCAATAATCTGACACTCGAAGAAGCATTCATAGGAAGGAAGCCATGTGTTGACCATCTCTGAATCTTTGGATGCCCCTCCTATATCCATGTTCCAAAGGACAAACGAAATAAGGTAGATTCTACAAGCATTAAAGGGATTTTCGTTGGCTACAGTCTTTCTTCAAAGGCATATAGAATCTACATCAAGGAAGGAAGACATATTGAAGTAAGCAGGGACGTTATA

Fln Alignment:

sp_v1.1_unigene56197___PEQNGVIERKNRTLEECIRTMIFYQDIPKFLWGEARMTVVYIQNRSPRRILNNLTLEEAFIGRKPCVDHL*IFGCPSYIHVPKDKRNKVDSTSIKGIFVGYSLSSKAYRIYIKEGRHIEVSRDVI
B8LKX7_______________PQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain