SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56131

Length: 406 nt

UniGene Fasta

>sp_v1.1_unigene56131
CGTCGTGATCTTGGCTGTCACTCCTTCGTGTATGTGGTGACTGTCACAATGCTGTCAAGTTTATTTCTAAGATTGTTGGACGTGAAATTGTAGTAAGGGACGTTATACGTTTTCACCATTTTAGGAATGGAACGTGCTCTTGTCAGGATTATTGGTAATACAAGATGAAGTGTGAGCACTATTTGGGAGTGGCTTGAATGCTTCTCTATACTATCCTCTATTGGTCTAGAAGTTGCCTCTTGTGACACGCGGAAATAAGGATAAACATGCTGAGAATATGTCAGTTGTCTCGTAGCTTCTTCATGTGGAGCAGGCTCACCTCTGCTGCACCAGTTTGGCAAATTGTCAAAATTTCCCTTTGGAGAAATGCTACGAACATCACTTTCTAAAGAGAACAAAAGCATGG

Ace file of the UniGene sp_v1.1_unigene56131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	3.0e-15	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.08286e-15	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 52 - 246

Fln protein: S*SWLSLLRVCGDCHNAVKFISKIVGREIVVRDVIRFHHFRNGTCSCQDYW*

Protein Length: 53

Fln nts: CGTCGTGATCTTGGCTGTCACTCCTTCGTGTATGTGGTGACTGTCACAATGCTGTCAAGTTTATTTCTAAGATTGTTGGACGTGAAATTGTAGTAAGGGACGTTATACGTTTTCACCATTTTAGGAATGGAACGTGCTCTTGTCAGGATTATTGGTAA___TACAAGATGAAGTGTGAGCACTATTTGGGAGTGGCTTGAATGCTTCTCTATACTATCCTCTATTGGTCTAGAAGTTGCCTCTTGTGACACGCGGAAATAAGGATAAACATGCTGAGAATATGTCAGTTGTCTCGTAGCTTCTTCATGTGGAGCAGGCTCACCTCTGCTGCACCAGTTTGGCAAATTGTCAAAATTTCCCTTTGGAGAAATGCTACGAACATCACTTTCTAAAGAGAACAAAAGCATGG

Fln Alignment:

sp_v1.1_unigene56131___LRVCGDCHNAVKFISKIVGREIVVRDVIRFHHFRNGTCSCQDYW
D5AAE0_______________LRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain