SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56076

Length: 552 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene56076
CGTCGTGACCTTGGCTGTGACTGGAAGAAGAAATTACAGAGATTCAAGCGAGGATGACGAACAAGGAAATCTACGAGCGGTCCGGGCGGGCATTTGTGCTTTCGGCTCAGAGCTCCCATTTTCGACAGAGAGCCACAACACGAGGCGAAAGTTTTGAGAGTTACAGCAGGGAATACCAGACTCCATCCATGGCGAACATGGTTCTCCGTTCCCAAACCTTCTCGGCAACGGCATCATCGAACCCTACTTCGAATTCTACAGTGAGTTCGAGTTCGAGTTCGATCCGTGCTCGGTGACCGTCTGAGTAACTCGCCGAATTCGATCCGCTGAGAAAATCATGTTTTAAGGATAGCAATTTGAATGCTGGATTTTGAGGTACACAATTTAAATCAGTCTTTTGTTGCCTTTTGAACATCTGTAAATCTAGATAATCGCAAGGATAAGAAGTTCTAAGCGTGTATCTTTTCCTCATCAAAATGTAGATAATTTGAAATTGTCTGTCATTTTTAATGAAGTACTGTCTAAAGAAATTTAAATTTGGGATCCTGGAAC

Ace file of the UniGene sp_v1.1_unigene56076

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	3.0e-12	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein binding	-	-	9.1498e-26	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 124 - 829

Fln protein: S*PWL*LEEEITEIQARMTNKEIYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMANMVLRSQTFSATASSNPTSNSTVSSSSSSIRAR*PSE*LAEFDPLRKSCFKDSNLNAGF*

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTGACTGGAAGAAGAAATTACAGAGATTCAAGCGAGGATGACGAACAAGGAAATCTACGAGCGGTCCGGGCGGGCATTTGTGCTTTCGGCTCAGAGCTCCCATTTTCGACAGAGAGCCACAACACGAGGCGAAAGTTTTGAGAGTTACAGCAGGGAATACCAGACTCCATCCATGGCGAACATGGTTCTCCGTTCCCAAACCTTCTCGGCAACGGCATCATCGAACCCTACTTCGAATTCTACAGTGAGTTCGAGTTCGAGTTCGATCCGTGCTCGGTGACCGTCTGAGTAACTCGCCGAATTCGATCCGCTGAGAAAATCATGTTTTAAGGATAGCAATTTGAATGCTGGATTTTGA___GGTACACAATTTAAATCAGTCTTTTGTTGCCTTTTGAACATCTGTAAATCTAGATAATCGCAAGGATAAGAAGTTCTAAGCGTGTATCTTTTCCTCATCAAAATGTAGATAATTTGAAATTGTCTGTCATTTTTAATGAAGTACTGTCTAAAGAAATTTAAATTTGGGATCCTGGAAC

Fln Alignment:

sp_v1.1_unigene56076___LEEEITEIQARMTNKEIYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMANMVLRSQTFXXXXXXXXXXXXXXXXXXXXXXXXXXXE*LAEFDPLRKSCFKDSNL----NAGF
C0PS55_______________LEAEITEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTL----SATASSNPASISTATSISARRTSEKLAKIAMLRKSCARVSDLHGFENGGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain