SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56053

Length: 512 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56053
CGTGGTGACCTTGGCTGTCACTCATATATAGGACGTTTCTGTCGGGAATGCACTTATAGACATGTATAGCAATTGTGGGAATGTGGAGATGGCATGGCAGTTGTTTGATGAAATGTCTCAAAGAAATGTGGTTTCATGGAGTGCAATGATTGGAGGGTATGTGTGGAATGGATATGCACACGAGGCCTTGGCACTCTTTTTGCAAATGCAAATTGCTGAGGTGAAACCTAATGCAGTTACACTGATTTGTGCTCTTGAGGCATGTGCTCAACTAACAACGGTGCAACAGGGGAAGGAAATCCATTGTTGCATTTTGAAAAACGGCTCTGAGGCAAACGTACCGGTCGGGACTGCCCTCTTGACTATGTACGTGAAATGTGGGTACATAGAGATTGCACGCCGTTTGTTTGACCAAATGCCTAGTAAAGATGTAGTGGCATGGAGCGCAATGATTTCAGGCTACGCCCAAAATGGGTATGCTAGTGAGGCTTTGGTGTTGTTTCGCCAAATGC

Ace file of the UniGene sp_v1.1_unigene56053 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] sp\|Q9M9E2.1\|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g15510, chloroplastic; Flags: Precursor gb\|AAF71977.1\|AC013453_2 Hypothetical protein [Arabidopsi	-	-	3.0e-35	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	protein	-	-	9.33825e-42	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	9.33825e-42	68%
Blast2go	growth	GO:0040007	Biological Process	9.33825e-42	68%
Blast2go	response to light stimulus	GO:0009416	Biological Process	9.33825e-42	68%
Blast2go	RNA modification	GO:0009451	Biological Process	9.33825e-42	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	9.33825e-42	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	9.33825e-42	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 170 - 394

Fln protein: VVTLAVTHI*DVSVGNALIDMYSNCGNVEMAWQLFDEMSQRNVVSWSAMIGGYVWNGYAHEALALFLQMQIAEVKPNAVTLICALEACAQLTTVQQGKEIHCCILKNGSEANVPVGTALLTMYVKCGYIEIARRLFDQMPSKDVVAWSAMISGYAQNGYASEALVLFRQM

Protein Length: 171

Fln nts: CGTGGTGACCTTGGCTGTCACTCATATATAGGACGTTTCTGTCGGGAATGCACTTATAGACATGTATAGCAATTGTGGGAATGTGGAGATGGCATGGCAGTTGTTTGATGAAATGTCTCAAAGAAATGTGGTTTCATGGAGTGCAATGATTGGAGGGTATGTGTGGAATGGATATGCACACGAGGCCTTGGCACTCTTTTTGCAAATGCAAATTGCTGAGGTGAAACCTAATGCAGTTACACTGATTTGTGCTCTTGAGGCATGTGCTCAACTAACAACGGTGCAACAGGGGAAGGAAATCCATTGTTGCATTTTGAAAAACGGCTCTGAGGCAAACGTACCGGTCGGGACTGCCCTCTTGACTATGTACGTGAAATGTGGGTACATAGAGATTGCACGCCGTTTGTTTGACCAAATGCCTAGTAAAGATGTAGTGGCATGGAGCGCAATGATTTCAGGCTACGCCCAAAATGGGTATGCTAGTGAGGCTTTGGTGTTGTTTCGCCAAATGC

Fln Alignment:

sp_v1.1_unigene56053___DVSVGNALIDMYSNCGNVEMAWQLFDEMSQRNVVSWSAMIGGYVWNGYAHEALALFLQMQIAEVKPNAVTLICALEACAQLTTVQQGKEIHCCILKNGSEANVPVGTALLTMYVKCGYIEIARRLFDQMPSKDVVAWSAMISGYAQNGYASEALVLFRQM
B8LKN6_______________DVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain