SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene56009

Length: 562 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene56009
ATGGGGAGGCTGGTGGTGAATGTTCCACAGAGCTTGTTACAAATCAGAAGCTGGGTCTACTGAAAGGATTCTTGCTGTTGATGATTGGTTGCATGCACATTTTCTGTTGGATCGTCTTTCTCCTCTTAATCCAGTTGCACATAAACCAATTTGTGATGGTTTGTTCAGGGTTATAGAAAGGACAATTTCTTCAAGCTATGCCATTGTGAGGCCATCACTTTTAGTAAATCTTGGTTCTTCTAATCGATCTGTTGATAATGCCACAACTGGAGATGGCATGGTAAAATATACGAGTCAAGGATCTTTTATTGAGTTACCTAGAGAACTTTTCCAGATGCTGGCATCTGTCGGTCCATATCTTTATCGGGATGCTCTTCTCCTACAAAAGGTTTGCAGAGTCTTAAGGGGTTACTATTCATCTGTCTTGGTACTTGTGGCATCTTCTGAAAGTTCAAGCTCTCAAGATTTAGGGATAGGTGATCGTAGAGATCCTCGTCTTCGGTTAAAGGAAGCTCGGTTAAATGTTGAGGAGGCACTTGGAACATGTTTGCTTCCATCTTTA

Ace file of the UniGene sp_v1.1_unigene56009 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tho2 protein, putative; K12879 THO complex subunit 2	-	-	5.0e-36	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	tho complex subunit 2	-	-	1.70958e-43	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HFB6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 128 aas, your sequence is shorter than subject: 187 - 649

Fln protein: WGGWW*MFHRACYKSEAGSTERILAVDDWLHAHFLLDRLSPLNPVAHKPICDGLFRVIERTISSSYAIVRPSLLVNLGSSNRSVDNATTGDGMVKYTSQGSFIELPRELFQMLASVGPYLYRDALLLQKVCRVLRGYYSSVLVLVASSESSSSQDLGIGDRRDPRLRLKEARLNVEEALGTCLLPSL

Protein Length: 188

Fln nts: ATGGGGAGGCTGGTGGTGAATGTTCCACAGAGCTTGTTACAAATCAGAAGCTGGGTCTACTGAAAGGATTCTTGCTGTTGATGATTGGTTGCATGCACATTTTCTGTTGGATCGTCTTTCTCCTCTTAATCCAGTTGCACATAAACCAATTTGTGATGGTTTGTTCAGGGTTATAGAAAGGACAATTTCTTCAAGCTATGCCATTGTGAGGCCATCACTTTTAGTAAATCTTGGTTCTTCTAATCGATCTGTTGATAATGCCACAACTGGAGATGGCATGGTAAAATATACGAGTCAAGGATCTTTTATTGAGTTACCTAGAGAACTTTTCCAGATGCTGGCATCTGTCGGTCCATATCTTTATCGGGATGCTCTTCTCCTACAAAAGGTTTGCAGAGTCTTAAGGGGTTACTATTCATCTGTCTTGGTACTTGTGGCATCTTCTGAAAGTTCAAGCTCTCAAGATTTAGGGATAGGTGATCGTAGAGATCCTCGTCTTCGGTTAAAGGAAGCTCGGTTAAATGTTGAGGAGGCACTTGGAACATGTTTGCTTCCATCTTTA

Fln Alignment:

sp_v1.1_unigene56009___LAVDDWLHAHFLLDRLSPLNPVAHKPICDGLFRVIERTISSSYAIVRPSLLVNLGSSNRSVDNATTGDGMVKYTSQGSFIELPRELFQMLASVGPYLYRDALLLQKVCRVLRGYYXXXXXXXXXXXXXXSQDLGIGDRRDPRLRLKEARLNVEEALGTCLLPSL
F6HFB6_______________LAVDDWYHAHILFDRLSPLNPVAHIEICNGLLRLIEKSISTAYGIVHQAHLESFGLSSSGSDLMETTNSSV----NRSFIDLPKELFQMLACVGPYFYRDTILLQKVCRVLRGYYLSALELVRSGDGAYNPESGVGGNRVPRLHLKEARSRIEEALGTCLLPSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain