SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55853

Length: 500 nt

UniGene Fasta

>sp_v1.1_unigene55853
ATCTATAAATACAGCAAATTTACCCGTCTGCATATGCCCTTAGTTTTGCACATTAATTCTTATCATCTTCATTTCTATGGCCATCCTCCTACTCCCACCCCTGCTGTGGTTGCAGCGGCAATTAAACAATGGTGGATGAATAAAGTGAAGAGTAAAGAAGTTTCAGCAGGTGCCAATGTTCGGGGCAACCAAAACCAATGTTCACAATTGGATATAGACAAACTCAAAATTCACAATGTTCTCACATGGAACGACATGATCGCAGATTATGTAAAGAATGGGTTCTGCCGCAAAGCGCTGAAAATGTATTTTCAAATGCAGCTCACAGGCATAAAACCGGACAAGATGGTATTTATCTCTGTAATCAATGCATGTGGCCGCCTATCAGATCTGCAAGCAGGCAAAAAGATTCACGAAGATGTCATCGCAAGAGGGTTTGAGTCGGATGTCTTCGTGGGTACCGCGCTTGCGTCAATGTATGTCAAGTGCCAGAGTTTAGA

Ace file of the UniGene sp_v1.1_unigene55853

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	pentatricopeptide repeat protein 77	-	-	1.03148e-34	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.03148e-34	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 623 aas, atg_distance in limit (1-15): atg_distance = 15, your sequence is shorter than subject: 155 - 795

Fln protein: MPLVLHINSYHLHFYGHPPTPTPAVVAAAIKQWWMNKVKSKEVSAGANVRGNQNQCSQLDIDKLKIHNVLTWNDMIADYVKNGFCRKALKMYFQMQLTGIKPDKMVFISVINACGRLSDLQAGKKIHEDVIARGFESDVFVGTALASMYVKCQSL

Protein Length: 156

Fln nts: ATCTATAAATACAGCAAATTTACCCGTCTGCAT_-_ATGCCCTTAGTTTTGCACATTAATTCTTATCATCTTCATTTCTATGGCCATCCTCCTACTCCCACCCCTGCTGTGGTTGCAGCGGCAATTAAACAATGGTGGATGAATAAAGTGAAGAGTAAAGAAGTTTCAGCAGGTGCCAATGTTCGGGGCAACCAAAACCAATGTTCACAATTGGATATAGACAAACTCAAAATTCACAATGTTCTCACATGGAACGACATGATCGCAGATTATGTAAAGAATGGGTTCTGCCGCAAAGCGCTGAAAATGTATTTTCAAATGCAGCTCACAGGCATAAAACCGGACAAGATGGTATTTATCTCTGTAATCAATGCATGTGGCCGCCTATCAGATCTGCAAGCAGGCAAAAAGATTCACGAAGATGTCATCGCAAGAGGGTTTGAGTCGGATGTCTTCGTGGGTACCGCGCTTGCGTCAATGTATGTCAAGTGCCAGAGTTTAGA

Fln Alignment:

sp_v1.1_unigene55853___LHINSYHLHFYGHXXXXXXXXXXXXIKQWWMNKVKS-KEVSAGANVRGNQNQCSQLDIDKLKIHNVLTWNDMIADYVKNGFCRKALKMYFQMQLTGIKPDKMVFISVINACGRLSDLQAGKKIHEDVIARGFESDVFVGTALASMYVKCQSL
B8LQA8_______________LHSISYHVCFYFYGPSPLPTSTV--VAQLRRNKVKTTREVSACAN----QTQFTQTDIR----NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain