SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55829

Length: 240 nt

UniGene Fasta

>sp_v1.1_unigene55829
CATGGAAGGTAGTCGGCGAATGGGGATGGTTGGAATTGATTCTACAACAAGTTCTATTGCAACTGTTGCTTGTGAAGTTGAAATATGCGATTGTGAGCCACTTCCAGATGGACGATTCTTATTGCAGGTTGAAGGACGTCGTCGTTTTCGTATTATTAGGTCTTGGGATCAGGATGGGTATCGAGTTGCAGAAGTTGAATGGATTGGTGACAACTGTCCACCAGATGGAACTAAGGATAA

Ace file of the UniGene sp_v1.1_unigene55829

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease	-	-	3.0e-08	36%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	69%
Blast2go	zinc finger (c3hc4-type ring finger) family protein	-	-	4.66681e-27	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.66681e-27	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S16, lon N-terminal	IPR003111	-	4.66681e-27	80%
Blast2go	PUA-like domain	IPR015947	-	4.66681e-27	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9F995

Fln msg: Distance to subject end: 93 aas, your sequence is shorter than subject: 79 - 640

Fln protein: MEGSRRMGMVGIDSTTSSIATVACEVEICDCEPLPDGRFLLQVEGRRRFRIIRSWDQDGYRVAEVEWIGDNCPPDGTKD

Protein Length: 80

Fln nts: CATGGAAGGTAGTCGGCGAATGGGGATGGTTGGAATTGATTCTACAACAAGTTCTATTGCAACTGTTGCTTGTGAAGTTGAAATATGCGATTGTGAGCCACTTCCAGATGGACGATTCTTATTGCAGGTTGAAGGACGTCGTCGTTTTCGTATTATTAGGTCTTGGGATCAGGATGGGTATCGAGTTGCAGAAGTTGAATGGATTGGTGACAACTGTCCACCAGATGGAACTAAGGATAA

Fln Alignment:

sp_v1.1_unigene55829___MEGSRRMGMVGIDSTTSSIATVACEVEICDCEPLPDGRFLLQVEGRRRFRIIRSWDQDGYRVAEVEWIGDNCPPDGTKD
B9F995_______________MEGNHRMGMVGIDSATGTVADCGCEVEILECEPLPDGRFYLEVEGSRRFRILRSWDQDGYRVAEIEWLQDISLPDGSQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain