SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55816

Length: 519 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene55816
ACTAATTTCCTACCAGGCAAATGTTTTGGCCTCATTAGAGGGTATTAAGGTTATCTTTTAGTTTATCACAGTCAGAAACTTTCTTGTAATAAAGGAATTATGTGAACTTTTTGCCTGCCATCTGATGCAGTTTATGATTGGTAAATATATTGGTCAAATAACTATTTTTTTGATGTCAGTTCAGTTGCCCTTTATTACATGTTACAAGGGGAATTTTAAGGATGCTTATCACAACATATTTTTCAATCATAAAGTGTTGGTATAATTCTTTTTACAGTCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGGTAACGTGAATTATATAATGACAGACTTTTGGATGAAGAGAGTAGCATGCCAATTTCTGGTTCACTAGGTTTTGAACATCTTACCCATTGATTGACTTCTCTTCCCTTGTCATTTGTTCTTTCTCTACAGAATGCT

Ace file of the UniGene sp_v1.1_unigene55816

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase (Fragment) n=2 Tax=Vitis vinifera RepID=A5C4K0_VITVI	-	-	5.0e-14	94%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	aspartate aminotransferase	-	-	8.59007e-14	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	8.59007e-14	92%

Source	KEGGs	Term	e value	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	8.59007e-14	92%
Blast2go	Cysteine and methionine metabolism	00270	8.59007e-14	92%
Blast2go	Arginine and proline metabolism	00330	8.59007e-14	92%
Blast2go	Tyrosine metabolism	00350	8.59007e-14	92%
Blast2go	Phenylalanine metabolism	00360	8.59007e-14	92%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	8.59007e-14	92%
Blast2go	Carbon fixation in photosynthetic organisms	00710	8.59007e-14	92%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	8.59007e-14	92%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	8.59007e-14	92%
Blast2go	Biosynthesis of phenylpropanoids	01061	8.59007e-14	92%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	8.59007e-14	92%
Blast2go	Biosynthesis of plant hormones	01070	8.59007e-14	92%
Blast2go	Metabolic pathways	01100	8.59007e-14	92%
Blast2go	Biosynthesis of secondary metabolites	01110	8.59007e-14	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	8.59007e-14	92%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	8.59007e-14	92%
Blast2go	nucleus	GO:0005634	Cellular Component	8.59007e-14	92%
Blast2go	cytosol	GO:0005829	Cellular Component	8.59007e-14	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.59007e-14	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aspartate/other aminotransferase	IPR000796	-	8.59007e-14	92%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	8.59007e-14	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 197 aas, your sequence is shorter than subject: 130 - 431

Fln protein: *FPTRQMFWPH*RVLRLSFSLSQSETFL**RNYVNFLPAI*CSL*LVNILVK*LFF*CQFSCPLLHVTRGILRMLITTYFSIIKCWYNSFYSHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKVT*

Protein Length: 131

Fln nts: ACTAATTTCCTACCAGGCAAATGTTTTGGCCTCATTAGAGGGTATTAAGGTTATCTTTTAGTTTATCACAGTCAGAAACTTTCTTGTAATAAAGGAATTATGTGAACTTTTTGCCTGCCATCTGATGCAGTTTATGATTGGTAAATATATTGGTCAAATAACTATTTTTTTGATGTCAGTTCAGTTGCCCTTTATTACATGTTACAAGGGGAATTTTAAGGATGCTTATCACAACATATTTTTCAATCATAAAGTGTTGGTATAATTCTTTTTACAGTCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGGTAACGTGAATTATATAATGACAGACTTTTGGATGAAGAGAGTAGCATGCCAATTTCTGGTTCACTAGGTTTTGAACATCTTACCCATTGATTGACTTCTCTTCCCTTGTCATTTGTTCTTTCTCTACAGAATGCT

Fln Alignment:

sp_v1.1_unigene55816___SHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVK
A9NUJ0_______________NHHNIWRDANVPQRTFHYYHPETRGLDFASLMDDVK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
363			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain