SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55811

Length: 356 nt

UniGene Fasta

>sp_v1.1_unigene55811
CGTCGTGACCTTGGCTGTCACTCAAATTCGGAAATTTGTTTCGTTTAAACATGCATTACCTGTCTCAGAATCACCTCTACGGTTCTATTCCGCCCACTCTTAGTAGGTGCCATCGTTTAGAGATCATCTCTATGGAGACTAACAATCTCACAGGTGCAATCCCGGCCTGGATGGGAAACATATCCTCTCTGGAGGAAATAAACCTGGGTTACAACAACCTTCACGGCAGCGTTCCCTCCGAATTGGGTATGCTAAGCCAGCTGAGATCTATACAACTGGGGGAGAACAATCTCACCGGACAAATTCCATCTTCCTTGTCTAACTGCACCCGCCTTCAAAACTTGAGGATGACAAAT

Ace file of the UniGene sp_v1.1_unigene55811

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)	-	-	1.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	serine-threonine protein plant-	-	-	5.0241e-21	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	5.0241e-21	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 162 aas, your sequence is shorter than subject: 118 - 551

Fln protein: S*PWLSLKFGNLFRLNMHYLSQNHLYGSIPPTLSRCHRLEIISMETNNLTGAIPAWMGNISSLEEINLGYNNLHGSVPSELGMLSQLRSIQLGENNLTGQIPSSLSNCTRLQNLRMTN

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCGGAAATTTGTTTCGTTTAAACATGCATTACCTGTCTCAGAATCACCTCTACGGTTCTATTCCGCCCACTCTTAGTAGGTGCCATCGTTTAGAGATCATCTCTATGGAGACTAACAATCTCACAGGTGCAATCCCGGCCTGGATGGGAAACATATCCTCTCTGGAGGAAATAAACCTGGGTTACAACAACCTTCACGGCAGCGTTCCCTCCGAATTGGGTATGCTAAGCCAGCTGAGATCTATACAACTGGGGGAGAACAATCTCACCGGACAAATTCCATCTTCCTTGTCTAACTGCACCCGCCTTCAAAACTTGAGGATGACAAAT

Fln Alignment:

sp_v1.1_unigene55811___LKFGNLFRLNMHYLSQNHLYGSIPPTL------SRCHRLEIISMETNNLTGAIPAWMGNISS-LEEINLGYNNLHGSVPSELGMLSQLRSIQLGENNLTGQIPSSLSNCTRLQNL
B8LRW5_______________VELGRLFRLERLFLRRNQLVSGSTTTLPILTALSNCPFLEQIHLGANHLTGTLLSSIQQLSTQLSVFDLSHNEIGGKIPPEIGKLANLTYLNLEWNIFNGSIPSTLGRLQKLERL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain