SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55753

Length: 1806 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene55753 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 7 homolog A n=25 Tax=Embryophyta RepID=PRS7A_ARATH	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	26s proteasome atpase subunit	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	97%
Blast2go	ATPase activity	GO:0016887	Molecular Function	97%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	97%
Blast2go	ATPase, AAA-type, core	IPR003959	-	97%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	97%
Blast2go	26S proteasome subunit P45	IPR005937	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRI8

Fln msg:

Fln protein: MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTAIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN*

Protein Length: 427

Fln nts: ATTGGGGAGAAAGTAAAGCTCGAGGGTGGAGCGCATTTTGTTCAGACATTTCGGTGAACAGAAAAGGTACATCAGGGAAAGGAAAAGAGGCAGGTTATAGGAAGAGAGGCGGGTTGGAGCAACAAAGAGAAACAAAAGCGAGGGTCTTTGTAAGAAGGAAGAGAACAGACAACC_-_ATGGCACCTGATCCAGAAGAAGACTTGAAGGAATCCAACCCCAGACCTCTTGACGAGGATGACATAGCTTTGCTTAAGACCTATGGTTTAGGACCTTATTCGACCGCCATAAAGAAAGCAGAGAAGGAAATCAAAGAAATGGCAAAGAAGGTTAATGATCTTTGCGGGATAAAAGAATCAGATACTGGCTTGGCTGCTCCCAGTCAATGGGATCTTGTTTCTGACAAGCAGATGATGCAAGAGGAGCAGCCTCTGCAGGTTGCACGGTGCACTAAAATCATTAATCCAAACACTGACGATGCCAAGTATGTTATAAATGTTAAACAAATTGCTAAGTTTGTTGTTGGATTAGGTGATAAGGTCTCCCCAACTGACATTGAAGAGGGGATGCGAGTCGGAGTTGATCGCAATAAGTATCATATTCAGATCCCTCTACCTCCTAAGATTGATCCCAGTGTGACAATGATGACTGTTGAAGAAAAGCCAGATGTTACCTACAATGATGTTGGTGGTTGCAAAGAACAAATTGAAAAGATGAGAGAGGTTGTGGAGCTTCCAATGCTTCATCCTGAGAAATTTGTTAAGCTTGGAATAGATCCTCCGAAAGGTGTCCTTTGCTATGGTCCTCCTGGCACAGGAAAAACACTATTAGCTCGAGCAGTGGCTAATCGTACTGATGCATGCTTTATTAGAGTTATTGGAAGTGAGCTTGTTCAGAAGTATGTTGGTGAGGGTGCTCGAATGGTACGGGAGCTTTTTCAGATGGCCCGGTCAAAGAAAGCCTGTATTGTCTTTTTTGATGAAGTGGATGCCATAGGTGGTGCTCGCTTTGATGATGGTTTAGGCGGTGATAATGAAGTACAGAGAACTATGCTTGAAATAGTGAACCAGTTGGATGGTTTTGATGCTCGTGGAAACATCAAAGTTCTAATGGCTACAAACAGGCCTGACACTCTTGATCCTGCATTATTACGGCCTGGTCGGTTGGACAGAAAGGTTGAATTTGGCTTACCGGATTTGGAAAGCAGGACTCAGATTTTTAAGATTCATACACGTACCATGAATTGTGAGCGAGACATTCGTTTTGAGCTGCTTTCCCGGTTATGCCCCAATTCTACAGGTGCTGACATTCGGAGTGTCTGCACTGAGGCTGGCATGTATGCTATTCGAGCACGTAGAAAGACTGTTACCGAGAAAGACTTTCTTGAAGCTGTGAATAAAGTCATTAAAGGATATCAAAAGTTTAGTGCGACACCCAAATACATGGTTTACAACTAA___AATTTTGCTCCAATATTTGATGTCTTATGTTTGATGGTGGAGCATGGCCATTCAACATCCTTACCATCTATGTTTAACTTGGTTGCTGTCGTAAGTTTCTGTAAATGGACTTGCATATTCATTATCAATTTATTGGGACCATACCAATCATACGGAGGCCAAAATTACAAAGCTTTTTTGATCATTGATTGGGATTCAATTTCCATCATGATGGATATTTCGTGGATCATTGAAAATTATCTTGGCAGAAATGATTTTATTATGCTATTGGCACATACTATGCTTTTACTTTGAAGAAATGAACGAATCCTGTCAATGCATCAAACTTGGACATTGTGGTTGTGTGCCTAATTT

Fln Alignment:

sp_v1.1_unigene55753___MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTXXXXXXXXXXXXXXKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN
B8LRI8_______________MAPDPEEDLKESNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYHIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLEAVNKVIKGYQKFSATPKYMVYN

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
347		18		81	0.999994
535	87		12		0.999964
537		87	12		0.999964
538		87		12	0.999964
540	12		87		0.999964
541		12	87		0.999964
543	87		12		0.999964
545		12	87		0.999964
1702		15		84	1.0
1704		38		55	1.0
1705	11	27		55	1.0
1706	11	16		72	1.0
1707	6	18	62	6	1.0
1708	20			80	1.0
1722	10	90			0.90298
1734	75	25			1.0
1735	75	25			1.0
1743		16		83	0.994512
1745	16			83	0.994512
1763	80	20			0.995493
1766		20		80	0.995494
1767	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain