SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55738

Length: 407 nt

UniGene Fasta

>sp_v1.1_unigene55738
AGTTAGCGGAATAAGTATGGTTAGTTCCTCCCTTGATTTCTTCACGGATAAACATCCCGACCTTTCAAATACCCCGACTTCACAAGTATCACGGATCAGGCCTCTATTCAGTAATTTCGATTTTAGTAAGTTGCAACTTGTTGCAACTGAAGAAGATCATTTAGAAGACATATTGAGGGAGCAGAAACCGCATTTGACATGGCTCCGTTGGTATGGATTTTCCCACTCTTCCCTTCCTGACTGGATTCCGATGACGAAGTTAAGAGTTCTGGAAATGCAGGGAAGCACTTTGAATAGACTGTGGCCACATCAATCTAAAGTGTTGCCTCTCGACCTGAAAGAGTTAAATATCTCGGCTCCCCTNTCAGAGATTCCAAGATCTATAGGGCAGCTGAAGCACCTCCAAA

Ace file of the UniGene sp_v1.1_unigene55738

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	7.0e-12	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	truncated tir-nbs-lrr protein	-	-	4.84948e-24	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Distance to subject end: 432 aas, your sequence is shorter than subject: 135 - 618

Fln protein: VSGISMVSSSLDFFTDKHPDLSNTPTSQVSRIRPLFSNFDFSKLQLVATEEDHLEDILREQKPHLTWLRWYGFSHSSLPDWIPMTKLRVLEMQGSTLNRLWPHQSKVLPLDLKELNISAPLSEIPRSIGQLKHLQ

Protein Length: 136

Fln nts: AGTTAGCGGAATAAGTATGGTTAGTTCCTCCCTTGATTTCTTCACGGATAAACATCCCGACCTTTCAAATACCCCGACTTCACAAGTATCACGGATCAGGCCTCTATTCAGTAATTTCGATTTTAGTAAGTTGCAACTTGTTGCAACTGAAGAAGATCATTTAGAAGACATATTGAGGGAGCAGAAACCGCATTTGACATGGCTCCGTTGGTATGGATTTTCCCACTCTTCCCTTCCTGACTGGATTCCGATGACGAAGTTAAGAGTTCTGGAAATGCAGGGAAGCACTTTGAATAGACTGTGGCCACATCAATCTAAAGTGTTGCCTCTCGACCTGAAAGAGTTAAATATCTCGGCTCCCCTaTCAGAGATTCCAAGATCTATAGGGCAGCTGAAGCACCTCCAAA

Fln Alignment:

sp_v1.1_unigene55738___FDFSKLQLVATEEDHLEDILRE-QKPHLTWLRWYGFSHSSLPDWIPMTKLRVLEMQGSTLNRLWPHQSKVLPLDLKELNISAPLSEIPRSIGQLKHLQ
B8LMZ7_______________YRFRKLQLVATEDDHLESILRRVESPNLIWLRWNNCPYSCLPSWIPMKNIRVLEVVGTKLKKLWRAESQA-PLELRELNVYAPLSMFPKSIGQMKHIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain