SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55678

Length: 374 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene55678
CGTCGTGACCTTGGCTGTCACTCAATTCCCGCCAACAGGACGTCGAAGGATACGAGTCTTGGAGAGCAACAGAAGCTCTGGAAGAGACGTAGAGGCGGTAGATTTTGCAGGACGGAGAGAACGAAAAATTCAAGGACGAAAGCTCCGCGAGTAAAAAAGATCAATGGAGGACGTGACTGATCCTTCCGAAGAATTTCGGGTAAGCAGTCAAAGAGGCGGCGCTGGTACGATTTTGAAAATTTCTGTGGAGAATTTCATGTGCCACAGCAGCCTAAAGATCGAATTCAGTGAATGGGTTAATTTTATCACCGGCCAGAACGGGAGTGGGAAGAGCGCGATATTAACTGCATTATGCGTTGCATTTGGCATCAAAA

Ace file of the UniGene sp_v1.1_unigene55678

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SMC-like protein n=3 Tax=Arabidopsis RepID=Q9FII7_ARATH	-	-	1.0e-19	81%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	83%
Blast2go	structural maintenance of chromosomes family protein	-	-	9.57275e-20	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	9.57275e-20	86%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	9.57275e-20	86%
Blast2go	response to X-ray	GO:0010165	Biological Process	9.57275e-20	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7MV22

Fln msg: Distance to subject end: 988 aas, your sequence is shorter than subject: 70 - 1057

Fln protein: MEDVTDPSEEFRVSSQRGGAGTILKISVENFMCHSSLKIEFSEWVNFITGQNGSGKSAILTALCVAFGIK

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCCGCCAACAGGACGTCGAAGGATACGAGTCTTGGAGAGCAACAGAAGCTCTGGAAGAGACGTAGAGGCGGTAGATTTTGCAGGACGGAGAGAACGAAAAATTCAAGGACGAAAGCTCCGCGAGTAAAAAAGATCA_-_ATGGAGGACGTGACTGATCCTTCCGAAGAATTTCGGGTAAGCAGTCAAAGAGGCGGCGCTGGTACGATTTTGAAAATTTCTGTGGAGAATTTCATGTGCCACAGCAGCCTAAAGATCGAATTCAGTGAATGGGTTAATTTTATCACCGGCCAGAACGGGAGTGGGAAGAGCGCGATATTAACTGCATTATGCGTTGCATTTGGCATCAAAA

Fln Alignment:

sp_v1.1_unigene55678___QRGGAGTILKISVENFMCHSSLKIEFSEWVNFITGQNGSGKSAILTALCVAFGIK
D7MV22_______________QRSGSGTILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain