SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55666

Length: 395 nt

UniGene Fasta

>sp_v1.1_unigene55666
CGTCGTGACCTTGGCTGTCACTCATGATAGAGGAGAACTGGATGAGAGGATGTTTGTGAATGATGAGGATATTTTGTTTGGTTCTGTCCGTGCATCTGTTGATTCTGTCAATATATTGGGGGCAAAGCGAAAGTATGAGGCTATCTCCTCACCAATGAAGAGAATAACAAGTCCATTATCTTCCCCAGCCTCTCCATCAGCTTCAGGAACAATATATTCAAATGTCAAGATGCTGCCACCTACCTTAGTGAGCACAACAATGACTACTGCGAAGTGGCTTCGGACTGTCATAGCACCACTTCCAGCTGAACCTTGTAAAGAGCTTAAACAGTTTTTTGCTTCTTGTGACAGAGATGTAACTGATGATCTTATTAGCAGGGCACATATAGTCCTGG

Ace file of the UniGene sp_v1.1_unigene55666

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retinoblastoma-related protein n=1 Tax=Ricinus communis RepID=RBR_RICCO	-	-	1.0e-26	50%
FL-Next	sp=Retinoblastoma-related protein 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	52%
Blast2go	retinoblastoma-related protein	-	-	2.36408e-26	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	2.36408e-26	69%
Blast2go	embryo sac development	GO:0009553	Biological Process	2.36408e-26	69%
Blast2go	negative regulation of cell division	GO:0051782	Biological Process	2.36408e-26	69%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	2.36408e-26	69%
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	2.36408e-26	69%
Blast2go	generative cell differentiation	GO:0022619	Biological Process	2.36408e-26	69%
Blast2go	G1/S transition of mitotic cell cycle	GO:0000082	Biological Process	2.36408e-26	69%
Blast2go	cell fate specification	GO:0001708	Biological Process	2.36408e-26	69%
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	2.36408e-26	69%
Blast2go	protein binding	GO:0005515	Molecular Function	2.36408e-26	69%
Blast2go	cytosol	GO:0005829	Cellular Component	2.36408e-26	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Retinoblastoma-associated protein, A-box	IPR002720	-	2.36408e-26	69%
Blast2go	Cyclin-like	IPR013763	-	2.36408e-26	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84QM3

Fln msg: Distance to subject end: 541 aas, your sequence is shorter than subject: 131 - 1010

Fln protein: VVTLAVTHDRGELDERMFVNDEDILFGSVRASVDSVNILGAKRKYEAISSPMKRITSPLSSPASPSASGTIYSNVKMLPPTLVSTTMTTAKWLRTVIAPLPAEPCKELKQFFASCDRDVTDDLISRAHIVL

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATAGAGGAGAACTGGATGAGAGGATGTTTGTGAATGATGAGGATATTTTGTTTGGTTCTGTCCGTGCATCTGTTGATTCTGTCAATATATTGGGGGCAAAGCGAAAGTATGAGGCTATCTCCTCACCAATGAAGAGAATAACAAGTCCATTATCTTCCCCAGCCTCTCCATCAGCTTCAGGAACAATATATTCAAATGTCAAGATGCTGCCACCTACCTTAGTGAGCACAACAATGACTACTGCGAAGTGGCTTCGGACTGTCATAGCACCACTTCCAGCTGAACCTTGTAAAGAGCTTAAACAGTTTTTTGCTTCTTGTGACAGAGATGTAACTGATGATCTTATTAGCAGGGCACATATAGTCCTGG

Fln Alignment:

sp_v1.1_unigene55666___RGELDERMFVNDEDILFGSVRASVDSVNILGAKRKYEAISSPMKRITXXXXXXXXXXXX---GTIYSNVKMLPPTLVSTTMTTAKWLRTVIAPLPAEPCKELKQFFASCDRDVTDDLISRAHIVL
Q84QM3_______________KGELDERMFANDEDSLLGSGSLSGGAINLPGTKRKYDVMASPAKSITSPSPMSPPRFCASPTGNGYCSSKMAPITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDITRRAGIIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain