SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55632

Length: 377 nt

UniGene Fasta

>sp_v1.1_unigene55632
CGTCGTGACCTTGGCTGTCACTCAGGCACCAGCTGCACAGACGCTACTCCCAATCCACTTCTACAGTTCAATTTCTCAGCAAAATTGCAATTATCCATACATCATTAACTACAACTTCTCCCGTCATTACTGCCCTCCATGGGGCAGACCTTCAGTGCATTATTTCACGAAGCGGGGATCGAACCGCCTACCGGTGTTAAAACGGCAGAGCGAACGGCGTTATTCCGTTAATAGAGTAAGAGCTGCGGGTGATTCAGACGAGGTGATGAAGCCTCCTTTCAATGTACTTATCACAGGCTCTTCAAAAGGTATTGGATATGCACTTGCAAAAGAATTCTTAAGTGCCGGTGATAATGTGATAATATGTTCAAGATCAG

Ace file of the UniGene sp_v1.1_unigene55632

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chlorophyll(ide) b reductase NOL, chloroplastic n=2 Tax=Oryza sativa RepID=NOL_ORYSJ	-	-	7.0e-11	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Short-chain dehydrogenase/reductase SDR	IPR002198	-	0.0	89%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVY8

Fln msg: Distance to subject end: 251 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 125 - 373

Fln protein: VVTLAVTQAPAAQTLLPIHFYSSISQQNCNYPYIINYNFSRHYCPPWGRPSVHYFTKRGSNRLPVLKRQSERRYSVNRVRAAGDSDEVMKPPFNVLITGSSKGIGYALAKEFLSAGDNVIICSRS

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCACCAGCTGCACAGACGCTACTCCCAATCCACTTCTACAGTTCAATTTCTCAGCAAAATTGCAATTATCCATACATCATTAACTACAACTTCTCCCGTCATTACTGCCCTCCATGGGGCAGACCTTCAGTGCATTATTTCACGAAGCGGGGATCGAACCGCCTACCGGTGTTAAAACGGCAGAGCGAACGGCGTTATTCCGTTAATAGAGTAAGAGCTGCGGGTGATTCAGACGAGGTGATGAAGCCTCCTTTCAATGTACTTATCACAGGCTCTTCAAAAGGTATTGGATATGCACTTGCAAAAGAATTCTTAAGTGCCGGTGATAATGTGATAATATGTTCAAGATCAG

Fln Alignment:

sp_v1.1_unigene55632___LAVTQAPAAQTLLPIHFYSSISQQNCNYPYIINYNFSRHYCPPWGRPSVHYFTKRGSNRLPVLKRQSERRYSVNRVRAAGDSDEVMKPPFNVLITGSSKGIGYALAKEFLSAGDNVIICSRS
A9NVY8_______________MATCRSAPTQTLLPIHFYSSISHQTCNYQCIINHNFCRNYCPPWGRASLQYYMKRGSNRLPVLRRQSERRYSVNRVRAAGDSDEVMKPPFNVLITGSSKGIGYALAKEFLSAGDNVIICSRS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain