SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55625

Length: 451 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene55625
TAGTTCCTGACAAGGTAACATACAATTGTACCCTGGCAGCTTTCTGTAAAGAGGGCAATATTGATAAAGCAACGGATATCATCCGGATGATGATTCACAATGGTTGGAATCCAGATGCTATTACATATGGCACTCTGATTTTTGGGCTTTGCAGAAGTGGCAGGTATGAGTCCGCTATAAAAATATTGCGAGCAATGCCCATGAAAGGGATGCCTCTTGATGCAGCGGCCTATAATCCCATCTTAAAATATCTCTGCATACGAAAGAGGATGCGTGAAGCTATGGCGATCTATACAGAGATGTTGGAAGAGGGTGTTGCTCCAAATGCCCACACGTATAATACCATTTTCCAGGGACTTTGCAGGGCGGGGGGTCCTATAGGAGCGGCTATAGAGTTTGTGGAGGATATGATGGAGAAGGGGTTCCTTCCAGAGATCACAACATTCATAGA

Ace file of the UniGene sp_v1.1_unigene55625

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SZC0_RICCO	-	-	4.99997e-41	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	pentatricopeptide repeat-containing	-	-	9.73118e-41	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	9.73118e-41	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	9.73118e-41	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 149 - 486

Fln protein: VPDKVTYNCTLAAFCKEGNIDKATDIIRMMIHNGWNPDAITYGTLIFGLCRSGRYESAIKILRAMPMKGMPLDAAAYNPILKYLCIRKRMREAMAIYTEMLEEGVAPNAHTYNTIFQGLCRAGGPIGAAIEFVEDMMEKGFLPEITTFI

Protein Length: 150

Fln nts: TAGTTCCTGACAAGGTAACATACAATTGTACCCTGGCAGCTTTCTGTAAAGAGGGCAATATTGATAAAGCAACGGATATCATCCGGATGATGATTCACAATGGTTGGAATCCAGATGCTATTACATATGGCACTCTGATTTTTGGGCTTTGCAGAAGTGGCAGGTATGAGTCCGCTATAAAAATATTGCGAGCAATGCCCATGAAAGGGATGCCTCTTGATGCAGCGGCCTATAATCCCATCTTAAAATATCTCTGCATACGAAAGAGGATGCGTGAAGCTATGGCGATCTATACAGAGATGTTGGAAGAGGGTGTTGCTCCAAATGCCCACACGTATAATACCATTTTCCAGGGACTTTGCAGGGCGGGGGGTCCTATAGGAGCGGCTATAGAGTTTGTGGAGGATATGATGGAGAAGGGGTTCCTTCCAGAGATCACAACATTCATAGA

Fln Alignment:

sp_v1.1_unigene55625___VPDKVTYNCTLAAFCKEGNIDKATDIIRMMIHNGWNPDAITYGTLIFGLCRSGRYESAIKILRAMPMKGMPLDAAAYNPILKYLCIRKRMREAMAIYTEMLEEGVAPNAHTYNTIFQGLCRAGGPIGAAIEFVEDMMEKGFLPEITTF
D5AAH0_______________IPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNE-GKFDEAKDFVEEMISNGFIPHISIY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
75		66	33		0.997471
76	33		66		0.997459
86	25	75			0.996481
87			75	25	0.996481
89	75		25		0.996474
90			25	75	0.996474
108	25			75	0.996479
142		25		75	0.996479
335	66			33	0.997452
339			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain