SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55616

Length: 442 nt

UniGene Fasta

>sp_v1.1_unigene55616
ATGGGGGTTTGATGGGGGTCGTCACATGGAGAATTATGAGAAAGACTGGCTGATCGAAGACCTGTTAACCCTCCCAATCGATTACTTTCGGCAGATAATGGAGTCCATCAGGAGGCAGGGGAATTATGAGGGATTCATCGGCCGAGCTCTGGTTCTGTACGTTGATAGGTGGGTTTATGACGTGATTAAACTCCACGGTCACATGAAGGGCAAGGACTCTGAAATGAAAAATGTACTAGAATCTATCATTAGGCTGCTTCCCGTGGAGAAAGAAGACACAGTGCCAGTTAGCTTTCTGTTTGGGCTACTTCGCTGTGCTTTTGCATGGAATGTGGGAAAAGAGTGCAGGTTCAGGCTCGAGATCAGAATTGCAGGCCAGCTCGATCAGGCTAGGCTTGCAGATTTTTTACTACCATTGATGAAGTAGAATGACAATGGTGAT

Ace file of the UniGene sp_v1.1_unigene55616

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp\|Q9FKB6.1\|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 dbj\|BAB09433.1\| non-phototropic hypocotyl-like protein [Arabidopsis thaliana]	-	-	1.0e-14	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	phototropic-responsive nph3 family protein	-	-	9.9271e-17	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.9271e-17	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NPH3	IPR004249	-	9.9271e-17	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 291 aas, your sequence is shorter than subject: 142 - 648

Fln protein: WGFDGGRHMENYEKDWLIEDLLTLPIDYFRQIMESIRRQGNYEGFIGRALVLYVDRWVYDVIKLHGHMKGKDSEMKNVLESIIRLLPVEKEDTVPVSFLFGLLRCAFAWNVGKECRFRLEIRIAGQLDQARLADFLLPLMK*

Protein Length: 143

Fln nts: ATGGGGGTTTGATGGGGGTCGTCACATGGAGAATTATGAGAAAGACTGGCTGATCGAAGACCTGTTAACCCTCCCAATCGATTACTTTCGGCAGATAATGGAGTCCATCAGGAGGCAGGGGAATTATGAGGGATTCATCGGCCGAGCTCTGGTTCTGTACGTTGATAGGTGGGTTTATGACGTGATTAAACTCCACGGTCACATGAAGGGCAAGGACTCTGAAATGAAAAATGTACTAGAATCTATCATTAGGCTGCTTCCCGTGGAGAAAGAAGACACAGTGCCAGTTAGCTTTCTGTTTGGGCTACTTCGCTGTGCTTTTGCATGGAATGTGGGAAAAGAGTGCAGGTTCAGGCTCGAGATCAGAATTGCAGGCCAGCTCGATCAGGCTAGGCTTGCAGATTTTTTACTACCATTGATGAAGTAGAATGACAATGGTGAT

Fln Alignment:

sp_v1.1_unigene55616___GFDGGRHMENYEKDWLIEDLLTLPIDYFRQIMESIRRQGNYEGFIGRALVLYVDRWVYDVIKLHGHMKGK-------DSEMKNVLESIIRLLPVEKEDTVPVSFLFGLLRCAFAWNVGKECRFRLEIRIAGQLDQARLADFLLP
B8LPD8_______________GINAGTRQRTAHLDWWHEDVAELSLPFYKRVISAMEAKGIRQESIAGAVMYYAKKFIPGLTRRQGIAKTLSLTSAPCEADQRELLETIESLLPDHRAGNT-TKFLFGLLRTANILNASDSCKKSLERRIGLQLEHATLDDLLIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain