SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55516

Length: 492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene55516
TTCCTAATGTAGTCATATATAATATTATCGTGAGTGGTTTGTGCAGAGAGGGCAGATTGGATAAAGCAGAAAAGCTTCTCAATGATTTGCCATTGAAAGGGTGCCAACCCAATGTAGTTACTCACAATACTCTGCTCCATGGTTTCTGCAATGCAGGGAGGTGGGAGGATGCTGGGAAGCTTTTAGCTGACATGTATAAGAGGGGCTGTGCTCCAAATGTTACCACTTTCAATATTTTACTCCATTTTCTGTCTCAAACAGGTCACCTTACTCAAGCAGTTGAAGTTTTGGAGGAGATGGTAAAGAAGGGATATACTCCTGATTCTATGAGCTACAACCCAATAATCCATGCGTCTTGCAAAGAGGGAAGAATAACTCTAGCAACTGAGCACCTATGTCAGATGGTTTCTAGAGGCTTATTTCCTAGCATATCTATCTATAATGCCCTGCTGACAGCTCTCTGCAGGATTGGGAGAGTAGATCAAGCAGTGC

Ace file of the UniGene sp_v1.1_unigene55516 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	pentatricopeptide repeat-containing protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	72%
Blast2go	Ankyrin repeat-containing domain	IPR020683	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 163 - 420

Fln protein: PNVVIYNIIVSGLCREGRLDKAEKLLNDLPLKGCQPNVVTHNTLLHGFCNAGRWEDAGKLLADMYKRGCAPNVTTFNILLHFLSQTGHLTQAVEVLEEMVKKGYTPDSMSYNPIIHASCKEGRITLATEHLCQMVSRGLFPSISIYNALLTALCRIGRVDQAV

Protein Length: 164

Fln nts: TTCCTAATGTAGTCATATATAATATTATCGTGAGTGGTTTGTGCAGAGAGGGCAGATTGGATAAAGCAGAAAAGCTTCTCAATGATTTGCCATTGAAAGGGTGCCAACCCAATGTAGTTACTCACAATACTCTGCTCCATGGTTTCTGCAATGCAGGGAGGTGGGAGGATGCTGGGAAGCTTTTAGCTGACATGTATAAGAGGGGCTGTGCTCCAAATGTTACCACTTTCAATATTTTACTCCATTTTCTGTCTCAAACAGGTCACCTTACTCAAGCAGTTGAAGTTTTGGAGGAGATGGTAAAGAAGGGATATACTCCTGATTCTATGAGCTACAACCCAATAATCCATGCGTCTTGCAAAGAGGGAAGAATAACTCTAGCAACTGAGCACCTATGTCAGATGGTTTCTAGAGGCTTATTTCCTAGCATATCTATCTATAATGCCCTGCTGACAGCTCTCTGCAGGATTGGGAGAGTAGATCAAGCAGTGC

Fln Alignment:

sp_v1.1_unigene55516___PNVVIYNIIVSGLCREGRLDKAEKLLNDLPLKGCQPNVVTHNTLLHGFCNAGRWEDAGKLLADMYKRGCAPNVTTFNILLHFLSQTGHLTQAVEVLEEMVKKG--YTPDSMSYNPIIHASCKEGRITLATEHLCQMVSRGLFPSISIYNALLTALCRIG
B8LN20_______________PDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain