SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55495

Length: 263 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene55495
CCCGCCTGCTGCGCCTTGCACGGCCTCGGCGGACGACGACGACGATGGTCGTGTCCACGACAACAGCCACGACCACGCTGGGATCGACCGTTACTGGCACCATCTTCGGGCAGCGCAAGGGCGCGTCAGCTTCTGCATCCAAGAAGACTCCCGTGGCCCTCCGCTCGTGTTGCTGGAATTCGCGCTGCCCACGCACTCCTTGGCCAAGGAGATGCAGCACGGCCTGCTGAGAATAACCTTGGAATGCTACAAGCACCGATCTG

Ace file of the UniGene sp_v1.1_unigene55495

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF617 domain containing protein	-	-	4.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	unknown [Picea sitchensis]	-	-	2.96858e-21	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLX4

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 87 - 242

Fln protein: PPAAPCTASADDDDDGRVHDNSHDHAGIDRYWHHLRAAQGRVSFCIQEDSRGPPLVLLEFALPTHSLAKEMQHGLLRITLECYKHRS

Protein Length: 88

Fln nts: CCCGCCTGCTGCGCCTTGCACGGCCTCGGCGGACGACGACGACGATGGTCGTGTCCACGACAACAGCCACGACCACGCTGGGATCGACCGTTACTGGCACCATCTTCGGGCAGCGCAAGGGCGCGTCAGCTTCTGCATCCAAGAAGACTCCCGTGGCCCTCCGCTCGTGTTGCTGGAATTCGCGCTGCCCACGCACTCCTTGGCCAAGGAGATGCAGCACGGCCTGCTGAGAATAACCTTGGAATGCTACAAGCACCGATCTG

Fln Alignment:

sp_v1.1_unigene55495___PPAAPCTASADDDDDGRVHDNSHDHAGIDRYWHHLRAAQGRVSFCIQEDSRGPPLVLLEFALPTHSLAKEMQHGLLRITLECYKHRS
A9NLX4_______________PACCACTASADDDD-GESTTTATTTLGSTVTGTIFGHRKGRVSFCIQGDSRGPPLVVLEFAVPTHSLAKEMQHGLLRITLECHKHRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain