SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55438

Length: 326 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene55438
GGCAAAGGGTGTGGGTTATTCTCCTCTGGGTAATGGCAATGGCGGGACTTTCACATGGAAATTCATTCAGTACAAGCACAAATATGCTTATCACGTAATGGGCTACTGCCTGCTCACTGCCAAAGGCGCTGCTGAGACATTGAAGCTCAATATGGCGCTGATTCTATTACCAGTCTGTCGTAATACAATCACATGGCTGCGTTCTACAAGACTTGGATGGATTGTGCCCTTCGATGACAACATCAATTTTCACAAGACAATTGCAGCAGCAATTGTCGTAGGAGTGGTGCTTCATGTGGGGAACCACTTGGCCTGTGATTTCCCCC

Ace file of the UniGene sp_v1.1_unigene55438 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Respiratory burst oxidase, putative n=1 Tax=Ricinus communis RepID=B9RCI7_RICCO	-	-	3.0e-34	72%
FL-Next	sp=Respiratory burst oxidase homolog protein F; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Blast2go	respiratory burst oxidase	-	-	1.43934e-34	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.43934e-34	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Flavoprotein transmembrane component	IPR013130	-	1.43934e-34	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48538

Fln msg: Distance to subject end: 451 aas, your sequence is shorter than subject: 108 - 944

Fln protein: AKGVGYSPLGNGNGGTFTWKFIQYKHKYAYHVMGYCLLTAKGAAETLKLNMALILLPVCRNTITWLRSTRLGWIVPFDDNINFHKTIAAAIVVGVVLHVGNHLACDFP

Protein Length: 109

Fln nts: GGCAAAGGGTGTGGGTTATTCTCCTCTGGGTAATGGCAATGGCGGGACTTTCACATGGAAATTCATTCAGTACAAGCACAAATATGCTTATCACGTAATGGGCTACTGCCTGCTCACTGCCAAAGGCGCTGCTGAGACATTGAAGCTCAATATGGCGCTGATTCTATTACCAGTCTGTCGTAATACAATCACATGGCTGCGTTCTACAAGACTTGGATGGATTGTGCCCTTCGATGACAACATCAATTTTCACAAGACAATTGCAGCAGCAATTGTCGTAGGAGTGGTGCTTCATGTGGGGAACCACTTGGCCTGTGATTTCCCCC

Fln Alignment:

sp_v1.1_unigene55438___GTFTWKFIQYKHKYAYHVMGYCLLTAKGAAETLKLNMALILLPVCRNTITWLRSTRLGWIVPFDDNINFHKTXXXXXXXXXXXXXXXXXACDFP
O48538_______________GLFLWKFFQYKQKDAFHVMGYCLLTAKGAAETLKFNMALILFPVCRNTITWLRSTRLSYFVPFDDNINFHKTIAGAIVVAVILHIGDHLACDFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain