SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55413

Length: 550 nt

UniGene Fasta

>sp_v1.1_unigene55413
AGAGTGTCACACAATTTCACTTGTTGATCAAATTTCGTTCCCAACAGCTTCATAGTTTCAGAAGCCCACATTTTTCTTACCTAATCCACTATTATTCTCGTTGACCATGAAGTGTATTATTCGCCTCTTTCACTGGTGTCCATCACGACAACTCCGGCTGGAACACGACGGACGAAATGCTGGACGTGGCTTCCATCCGAAGGTGGTTGCCGGCTGGACTTGTAAACTTCTTTCCACCATATCTGCGGGCAACGGTTAAACCCGATTTCGGAAGAGTGGCGATAGCGGGCCACAGCCGTGGGGGCAAGGTGGCCTTCGGCGCGGCCATGGGGCTCTTTTCACCGCCCAGTTTCTCCGCCCTGGCGGCGCTGGACCCGGTCGACGGTGCCACCGGCCACCCGACGATCCCACCGCTGCTGACAGACTCACGGAATTCTCTGAACCTCAAAATTCCGACACTCATCGTGGGAACGGGCCTCGGGACGGTAGAGTACCGGTTGTTCCCTACCTGCGCACCGAAGGGCCTTGGTCACGTAGAGTTCTTCCGGGA

Ace file of the UniGene sp_v1.1_unigene55413

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chlorophyllase-2, chloroplast precursor, putative (EC:3.1.1.14)	-	-	1.0e-21	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	chlorophyll-chlorophyllido hydrolase 2	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chlorophyllase.	EC:3.1.1.14	-	0.0	61%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	61%
Blast2go	Metabolic pathways	01100	61%
Blast2go	Biosynthesis of secondary metabolites	01110	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	chlorophyll catabolic process	GO:0015996	Biological Process	0.0	61%
Blast2go	chlorophyllase activity	GO:0047746	Molecular Function	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyllase	IPR010821	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0C3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 182 - 346

Fln protein: SVTQFHLLIKFRSQQLHSFRSPHFSYLIHYYSR*P*SVLFASFTGVHHDNSGWNTTDEMLDVASIRRWLPAGLVNFFPPYLRATVKPDFGRVAIAGHSRGGKVAFGAAMGLFSPPSFSALAALDPVDGATGHPTIPPLLTDSRNSLNLKIPTLIVGTGLGTVEYRLFPTCAPKGLGHVEFFR

Protein Length: 183

Fln nts: AGAGTGTCACACAATTTCACTTGTTGATCAAATTTCGTTCCCAACAGCTTCATAGTTTCAGAAGCCCACATTTTTCTTACCTAATCCACTATTATTCTCGTTGACCATGAAGTGTATTATTCGCCTCTTTCACTGGTGTCCATCACGACAACTCCGGCTGGAACACGACGGACGAAATGCTGGACGTGGCTTCCATCCGAAGGTGGTTGCCGGCTGGACTTGTAAACTTCTTTCCACCATATCTGCGGGCAACGGTTAAACCCGATTTCGGAAGAGTGGCGATAGCGGGCCACAGCCGTGGGGGCAAGGTGGCCTTCGGCGCGGCCATGGGGCTCTTTTCACCGCCCAGTTTCTCCGCCCTGGCGGCGCTGGACCCGGTCGACGGTGCCACCGGCCACCCGACGATCCCACCGCTGCTGACAGACTCACGGAATTCTCTGAACCTCAAAATTCCGACACTCATCGTGGGAACGGGCCTCGGGACGGTAGAGTACCGGTTGTTCCCTACCTGCGCACCGAAGGGCCTTGGTCACGTAGAGTTCTTCCGGGA

Fln Alignment:

sp_v1.1_unigene55413___HDNSGWNTTDEMLDVASIRRWLPAGLVNFFPPYLRATVKPDFGRVAIAGHSRGGKVAFGAAMGLFSPPSFSALAALDPVDGATGHPTIPPLLTDSRNSLNLKIPTLIVGTGLGTVEYRLFPTCAPKGLGHVEFFR
A9P0C3_______________YDITGWNTTDEMLDVASIRSWLPEGLTNFFPPDL-AEVKPDFQRVAIAGHSRGGKVAFGAAMGLFSPPSFSALAALDPVDGATGHPTSPPLLTNSQNSLNLKVPTLVVGTGLGPAEHWMFPTCAPEGLDHVEFFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain