SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55321

Length: 546 nt

UniGene Fasta

>sp_v1.1_unigene55321
CCCTGCCTGTGCTGACTTAGCAGACCTGCAAGAGGGTAAACGTATCCATGATTACATTATAGAAAATGGATTTGAGTCGGATGTTTCGGTGGGGACTGCTCTTGTAGCGATGTATGCAAATTGTGGGTGTATAGAGCAGGCACTACAATTATTTGACAAAATGCCCAAAAGAGACGTGGTTGCGTGGAATGCAATGATTGCAGCGTGTGCCCAAAACGGATATGCAAGTGAGGCTTTGGGATTGCTTTATCAGATGCAAGTGGCACGTGTGCAATGCGACGTCGTTACCATGGTGAGTGTACTGCCAGCGTGTGCCCATCTAGCGGAACTTCATCAAGGAGAGTTGGTCCATGAATATGCAATTAGAAATGGCTTTGAATCAGATGTCTCTTTGAAGAATGCCCTCGTAGACATGTATGCCAAATGTGGGGTTATAGAGAAAGCCTACCAATTGTTAAAAAAAATTCCAGTAGAGACAATGTCTCGTGGAATGCAATGATTGCGGGGTTTGCTCAAAAATGGACTTGCTGTTGATGCCTTGGAACA

Ace file of the UniGene sp_v1.1_unigene55321

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKC9_RICCO	-	-	2.0e-35	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	pentatricopeptide repeat-containing	-	-	9.3887e-44	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	9.3887e-44	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 289 aas, your sequence is shorter than subject: 166 - 795

Fln protein: PACADLADLQEGKRIHDYIIENGFESDVSVGTALVAMYANCGCIEQALQLFDKMPKRDVVAWNAMIAACAQNGYASEALGLLYQMQVARVQCDVVTMVSVLPACAHLAELHQGELVHEYAIRNGFESDVSLKNALVDMYAKCGVIEKAYQLLKKIPVETMSRGMQ*

Protein Length: 167

Fln nts: CCCTGCCTGTGCTGACTTAGCAGACCTGCAAGAGGGTAAACGTATCCATGATTACATTATAGAAAATGGATTTGAGTCGGATGTTTCGGTGGGGACTGCTCTTGTAGCGATGTATGCAAATTGTGGGTGTATAGAGCAGGCACTACAATTATTTGACAAAATGCCCAAAAGAGACGTGGTTGCGTGGAATGCAATGATTGCAGCGTGTGCCCAAAACGGATATGCAAGTGAGGCTTTGGGATTGCTTTATCAGATGCAAGTGGCACGTGTGCAATGCGACGTCGTTACCATGGTGAGTGTACTGCCAGCGTGTGCCCATCTAGCGGAACTTCATCAAGGAGAGTTGGTCCATGAATATGCAATTAGAAATGGCTTTGAATCAGATGTCTCTTTGAAGAATGCCCTCGTAGACATGTATGCCAAATGTGGGGTTATAGAGAAAGCCTACCAATTGTTAAAAAAAATTCCAGTAGAGACAATGTCTCGTGGAATGCAATGATTGCGGGGTTTGCTCAAAAATGGACTTGCTGTTGATGCCTTGGAACA

Fln Alignment:

sp_v1.1_unigene55321___PACADLADLQEGKRIHDYIIENGFESDVSVGTALVAMYANCGCIEQALQLFDKMPKRDVVAWNAMIAACAQNGYASEALGLLYQMQVARVQCDVVTMVSVLPACAHLAELHQGELVHEYAIRNGFESDVSLKNALVDMYAKCGVIEKAYQLLKKIPVETMSRGMQ*LRGLLKNGLAVDAL
B8LQA8_______________PVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain