SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55284

Length: 1472 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene55284

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	glutamate decarboxylase	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	85%
Blast2go	Glutamate decarboxylase	IPR010107	-	85%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	85%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTD1

Fln msg: your sequence is shorter than subject: 364 - 509

Fln protein: RRDLGCHSIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLIQKNKETGWDTGIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGAAR*LLNITSSYVWGSQGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVIREDFNRSLAERLVRDIEKVLRELDALPSKIVREVTASLVESHPELKEEKDIEETARLKSSHVVDRIVSCRRAAEEKKKFVFVEQKPNRIC*

Protein Length: 365

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGACGGGTGCAAATGTGCAGGTGTGTTGGGAGAAATTTGCTCGTTATTTTGAAGTAGAGTTAAAGGAAGTTAAACTGAGGGAGGGTTACTATGTCATGGACCCTGTCAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACATATAATGGAGAGTTCGAGGATGTTAAGCTGTTGAATGATCTCCTTATTCAGAAAAACAAGGAAACAGGGTGGGACACAGGCATACATGTGGACGCGGCGAGCGGTGGATTCATTGCACCGTTCCTCTACCCTGATTTGGAATGGGACTTCCGCCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGGCTCGTCTATGCCGGAGTGGGATGGGCTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAACTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAACTTCTCCAAAGGGGCCGCCAGATAATTGCTCAATATTACCAGCTCATACGTCTGGGGTTCGCAGGGATATAGGAACATCATGCGTAACTGCGAAGCAAACGCGAAGGCTCTGGCCGATGGTTTGGTGAGGACCGGGCGGTTCAACATACTGTCGAAAGAGGTGGGGGTTCCTCTAGTGGCGTTTTCGCTCAAGGACAGTAGCAGGCACGATGTGTATGAAATCTCTGACCACCTGAGAAGGTTCGGGTGGATCGTGCCCGCCTACACCATGGCCCCCGACGCACAGCACGTAACCCTTCTGCGCGTGGTGATTCGCGAAGATTTCAACCGCAGTCTGGCAGAACGACTGGTTCGGGACATAGAGAAAGTGTTGCGGGAACTTGACGCGCTTCCTTCAAAGATAGTGAGGGAAGTGACGGCATCTCTGGTAGAAAGCCATCCTGAACTCAAAGAAGAGAAAGATATAGAGGAGACTGCGAGGTTGAAGTCGTCTCATGTGGTGGACAGGATTGTTAGCTGTCGCAGAGCGGCCGAAGAGAAGAAGAAATTTGTTTTTGTTGAGCAGAAGCCCAATCGGATTTGTTGA___AAACCATTGAAATAGCTTCTAATATTTATTTTATTTCTCCGTTGTTCATCGAATTATTCGGCTTAGCCATTGTTTTAGGATCGACAACTGCAGAATCGAATAGGAGAGATTTATCGAAACCACGTGCCAGGGGTGTGTGTCCCCTGAGTAGGTTTCATCAATTTTGTAGTATCTTCTGTTGTTTTTTAACTTTCCCTTGGAGAGGCTTATTACCAGTAATCATATTATAAATAGCTAGCATTGTCAACGTTATAATTGTATCTTGGAGCTTATAGATTTGAACAGAAACTTACTTGACCAATTTTTAACTCCTAGAAACAGGAGTGACAATCCCAAGTTCTGTATAAAGTCTTTTCTAACATAAAACTTTATTTGTACTT

Fln Alignment:

sp_v1.1_unigene55284___SIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLIQKNKETGWDTGIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGAAR*LLNITSSYVWGSQGYRNIMRNCEANAKALADGLVRTGRFNILSKEVGVPLVAFSLKDSSRHDVYEISDHLRRFGWIVPAYTMAPDAQHVTLLRVVIREDFNRSLAERLVRDIEKVLRELDALPSKIVREVTASLVESHPELKEEKDIE-ETARLKSSHVVDRIVSCRRXXXXXXXXXXXXQKPNRIC
C0PTD1_______________NIVTGANVQVCWEKFARYFEVELKEVKLRKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMSNCAANAKALADGLVRTGRFDILSKEVGVPLVAFSLKDNSKHDEYEIADHLRRYGWIVPAYTMAPDAQQVTLLRVVVREDFNRSLAERLVRDIEKVLHELDALPSKLVTEVTASLVESHPELKEVKDIDIDSTKLNSCHVFNEVLNSQK--AVKAWKKFVAQKANRVC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1361		25	75		0.996474

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain