SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55248

Length: 484 nt

UniGene Fasta

>sp_v1.1_unigene55248
TTTGGGCTAATTTAGTGATTTATCTCACAACCAACCTGCACGAGAGCACTGTTTCTGCTTCCAGAAATGTCAATAACTGGGTCGGTACTATGTGGATTATGCCCATGCTGGGAGCTTACATTGCTGATACTCACTGGGGGCGCTACTGGACCTTCATAGTCTTCTCAGCTGTCTATGTATTGGTATGGCGATTCTCACGTTGGCCGTGTCTCTGCCATCTCTGAGATCCCATGCTTGCTCTTCCAACAAAGGCTGCGAGAATGTGTCAAATCTTCAGACTGGTATTTTCTATTCTGGATTATATCTTCTGGCGATCGGTGCTGGAGGAACAAAGTCCAACATCTCCACTTTCGGGGCGGATCAGTTTGATGATTTCAATCCCAAGGAAAAGAGGCAGAAGAACTCATTTTTCAATTGGTGGATGTTCACCATATTCCTGGGAACTCTGCTTGGTAAAACATTCCTGATATATATCGAAGACAAG

Ace file of the UniGene sp_v1.1_unigene55248

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9SKP9_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Overlapping hits, possible frame ERROR between 182 and 179, Distance to subject end: 361 aas, your sequence is shorter than subject: 161 - 594

Fln protein: WANLVIYLTTNLHESTVSASRNVNNWVGTMWIMPMLGAYIADTHWGRYWTFIVFSAVYxxxMAILTLAVSLPSLRSHACSSNKGCENVSNLQTGIFYSGLYLLAIGAGGTKSNISTFGADQFDDFNPKEKRQKNSFFNWWMFTIFLGTLLGKTFLIYIEDK

Protein Length: 162

Fln nts: TTTGGGCTAATTTAGTGATTTATCTCACAACCAACCTGCACGAGAGCACTGTTTCTGCTTCCAGAAATGTCAATAACTGGGTCGGTACTATGTGGATTATGCCCATGCTGGGAGCTTACATTGCTGATACTCACTGGGGGCGCTACTGGACCTTCATAGTCTTCTCAGCTGTCTATxxxxxxxxxATGGCGATTCTCACGTTGGCCGTGTCTCTGCCATCTCTGAGATCCCATGCTTGCTCTTCCAACAAAGGCTGCGAGAATGTGTCAAATCTTCAGACTGGTATTTTCTATTCTGGATTATATCTTCTGGCGATCGGTGCTGGAGGAACAAAGTCCAACATCTCCACTTTCGGGGCGGATCAGTTTGATGATTTCAATCCCAAGGAAAAGAGGCAGAAGAACTCATTTTTCAATTGGTGGATGTTCACCATATTCCTGGGAACTCTGCTTGGTAAAACATTCCTGATATATATCGAAGACAAG

Fln Alignment:

sp_v1.1_unigene55248___NLVIYLTTNLHESTVSASRNVNNWVGTMWIMPMLGAYIADTHWGRYWTFIVFSAVYVxGMAILTLAVSLPSLRSHACSSNKGCENVSNLQTGIFYSGLYLLAIGAGGTKSNISTFGADQFDDFNPKEKRQKNSFFNWWMFTIFLGTLLGKTFLIYIED
A9NVR2_______________NLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFxGMATLTLSASVSSLKPPSCIGSD-CPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain