SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55167

Length: 386 nt

UniGene Fasta

>sp_v1.1_unigene55167
ATGGGGGATTTCCTCAATTTCATCCAACCATTCGTTCCATTGTATTCAATTTAATTGAATGAACGAAATGTTGGGTCGCAGAAATCCGCAGCTGAATATCCCAATCCCGGCGCGCCAACAGACTCAGCTTTATCGACTTCCTCTGCCTCCGCAGAGTACAGCTGCTTCCACAGACGTGATAAATCTGTCAGAGTTGGAACGAATTCAGATTTTGGGGCATGGAAGCGGGGGTAAGTGTACAAGGTTCGACACAAGAAGACTTCGGCCCTTTATGCCCTCAAAGTCATTCACTGCAACCATGACGAGACTGTGAGGCGGCAGATAATCCGAGAGATGGAAATTCTGAAGAAGACGGAATCCCCATATATAGTGAAATGCTACGGGAT

Ace file of the UniGene sp_v1.1_unigene55167

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAPKK n=2 Tax=Solanoideae RepID=Q66MH6_SOLLC	-	-	2.0e-21	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	mitogen-activated protein kinase kinase	-	-	3.67384e-21	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	floral organ abscission	GO:0010227	Biological Process	3.67384e-21	76%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	3.67384e-21	76%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	3.67384e-21	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	3.67384e-21	76%
Blast2go	nucleus	GO:0005634	Cellular Component	3.67384e-21	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYQ4

Fln msg: Overlapping hits, possible frame ERROR between 259 and 229, Distance to subject end: 211 aas, your sequence is shorter than subject: 109 - 318

Fln protein: MNEMLGRRNPQLNIPIPARQQTQLYRLPLPPQSTAASTDVINLSELERIQILGHGSxxxxxxxxxxxxSALYALKVIHCNHDETVRRQIIREMEILKKTESPYIVKCYG

Protein Length: 110

Fln nts: ATGGGGGATTTCCTCAATTTCATCCAACCATTCGTTCCATTGTATTCAATTTAATTGA_-_ATGAACGAAATGTTGGGTCGCAGAAATCCGCAGCTGAATATCCCAATCCCGGCGCGCCAACAGACTCAGCTTTATCGACTTCCTCTGCCTCCGCAGAGTACAGCTGCTTCCACAGACGTGATAAATCTGTCAGAGTTGGAACGAATTCAGATTTTGGGGCATGGAAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCGGCCCTTTATGCCCTCAAAGTCATTCACTGCAACCATGACGAGACTGTGAGGCGGCAGATAATCCGAGAGATGGAAATTCTGAAGAAGACGGAATCCCCATATATAGTGAAATGCTACGGGAT

Fln Alignment:

sp_v1.1_unigene55167___MLGRRNPQLNIPIPARQQTQLYRLPLPPQSTAASTDVINLSELERIQILGHGSGxxxxxxxxxxTSALYALKVIHCNHDETVRRQIIREMEILKKTESPYIVKCYG
A9NYQ4_______________MSGRRNPRLNIPIPARQQTQLYRLPLPPQNTAVSKDVSDLSDLERIQILGHGSGxxxxxxxxxxTSALYALKVIHGNHDEAVRRQIIREMEILKKTESPYIVKCHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain