SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55091

Length: 365 nt

UniGene Fasta

>sp_v1.1_unigene55091
GGGACATGCAATGCATGTATTTATTAATCAGGAGTTTGTAGGAAGTGCATCCGGGAATGGGGACAATATCAAATTCAAGTATGAAAAAGATATTTCTTTGAAGGCCGGGAAAATAACATTGCTCTTCTGAGTATGACAGTAGGCTTACAGAATGGTGGACCATATTATGATTTTGTGGGAGCAGGCATCTCAACAGTCAAATTGGAAGGCTTTCAAAATGGAACCATAGACTTATCATCAAATGCTTGGACATATGAGATTGGGCTGAAAGGTGAAAACCTGAGTCTTTACCTAGAAAGTGGAACTGCAAATGCACAATGGGAAAAAGCTGCTAGTCCTCCAAAGAATCAATCTTTGATATGGTA

Ace file of the UniGene sp_v1.1_unigene55091

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase 2 (Fragment) n=1 Tax=Ficus carica RepID=Q6RX16_FICCA	-	-	2.0e-33	55%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	beta-galactosidase 10	-	-	3.45776e-33	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.45776e-33	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	3.45776e-33	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 35	IPR001944	-	3.45776e-33	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Overlapping hits, possible frame ERROR between 112 and 109, Distance to subject end: 222 aas, your sequence is shorter than subject: 121 - 861

Fln protein: GHAMHVFINQEFVGSASGNGDNIKFKYEKDISLKAxxxNIALLSMTVGLQNGGPYYDFVGAGISTVKLEGFQNGTIDLSSNAWTYEIGLKGENLSLYLESGTANAQWEKAASPPKNQSLIW

Protein Length: 122

Fln nts: GGGACATGCAATGCATGTATTTATTAATCAGGAGTTTGTAGGAAGTGCATCCGGGAATGGGGACAATATCAAATTCAAGTATGAAAAAGATATTTCTTTGAAGGCCxxxxxxxxxAACATTGCTCTTCTGAGTATGACAGTAGGCTTACAGAATGGTGGACCATATTATGATTTTGTGGGAGCAGGCATCTCAACAGTCAAATTGGAAGGCTTTCAAAATGGAACCATAGACTTATCATCAAATGCTTGGACATATGAGATTGGGCTGAAAGGTGAAAACCTGAGTCTTTACCTAGAAAGTGGAACTGCAAATGCACAATGGGAAAAAGCTGCTAGTCCTCCAAAGAATCAATCTTTGATATGGTA

Fln Alignment:

sp_v1.1_unigene55091___GHAMHVFINQEFVGSASGNGDNIKFKYEKDISLKAGxNNIALLSMTVGLQNGGPYYDFVGAGIS-TVKLEGFQNGTIDLSSNAWTYEIGLKGENLSLYLESGTANAQWEKAASPPKNQSLIW
A9NUR2_______________GHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGxNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain