SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene55015

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene55015
CGTCGTGACCTTGGCTGTCACTCAATTCTCTTTATCGATGAGATACATACAGTTGTTGGGGCAGGTGCTACAAGTGGAGCTATGGATGCAGGCAACTTATTAAAACCTATGCTTGGACGAGGCGAGCTACGTTGTATTGGAGCAACGACACTCAATGAATACCGCAAATACATTGAAAAGGATGCTGCTCTGGAACGCAGATTTCAGCAAGTATATGTGGGTCAGCCATCAGTGGAAGATAGTATATCTATTCTTCGTGGATTGCGTGAACGCTATGAATTGCACCATGGAGTTAGAATATCTGATGGTGCACTAGTTGCAGCTGCTGTTCTTTCAGACAGATATATT

Ace file of the UniGene sp_v1.1_unigene55015 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os02g0181900 protein (Fragment) n=1 Tax=Oryza sativa Japonica Group RepID=Q0E3C8_ORYSJ	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	chaperone clpb expressed	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	96%
Blast2go	response to heat	GO:0009408	Biological Process	96%
Blast2go	binding	GO:0005488	Molecular Function	96%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chaperonin ClpA/B, conserved site	IPR018368	-	0.0	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS4

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 116 - 463

Fln protein: RRDLGCHSILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDAALERRFQQVYVGQPSVEDSISILRGLRERYELHHGVRISDGALVAAAVLSDRYI

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCTTTATCGATGAGATACATACAGTTGTTGGGGCAGGTGCTACAAGTGGAGCTATGGATGCAGGCAACTTATTAAAACCTATGCTTGGACGAGGCGAGCTACGTTGTATTGGAGCAACGACACTCAATGAATACCGCAAATACATTGAAAAGGATGCTGCTCTGGAACGCAGATTTCAGCAAGTATATGTGGGTCAGCCATCAGTGGAAGATAGTATATCTATTCTTCGTGGATTGCGTGAACGCTATGAATTGCACCATGGAGTTAGAATATCTGATGGTGCACTAGTTGCAGCTGCTGTTCTTTCAGACAGATATATT

Fln Alignment:

sp_v1.1_unigene55015___ILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDAALERRFQQVYVGQPSVEDSISILRGLRERYELHHGVRISDGALVAAAVLSDRYI
B8LQS4_______________ILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVTDTISILRGLKEKYEGHHGVRILDRALVVAAQLSSRYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain