SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54955

Length: 445 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54955
TACTTATTGGGGGGTAGAGCGAGCGAGAAAATGGACGTTTACAGTTACGGAGTGGTGGTGCGTGGAGTTGATAACGAGAAAGAAGGACATTAATGGATTTGAGTTCTGCAGAGGGATGGACATCGTCAGTTGGGTGAAGTCCCATGCTGCTGAGGATTATGTTAATTCCGTGGTGGATGAAGGGCTGCGAGATGAATTAATTGAATCGCAAGCAAAATCAGAGATTATGGGTACAATTCGAATTGCATTGCAATGCACGGCTGCCAAGGCAGAGGAGAGGCCAAGCATGAGAAAAGTGGTACAAATGCTCAGAGCGCTGAGACCTGTGAAGCCAATAAAAAGAAATTCAGATGCAAAAGGTAAAGTCGTTGTCGGGGGACCATCCACCCCTGCCTGAAGAAATGAGATGAGTGTGTGAAGAGATAGCACATGTGATGCGGAGCCA

Ace file of the UniGene sp_v1.1_unigene54955 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)	-	-	4.0e-09	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A947

Fln msg: your sequence is shorter than subject: 132 - 287

Fln protein: TYWGVERARKWTFTVTEWWCVELITRKKDINGFEFCRGMDIVSWVKSHAAEDYVNSVVDEGLRDELIESQAKSEIMGTIRIALQCTAAKAEERPSMRKVVQMLRALRPVKPIKRNSDAKGKVVVGGPSTPA*

Protein Length: 133

Fln nts: TACTTATTGGGGGGTAGAGCGAGCGAGAAAATGGACGTTTACAGTTACGGAGTGGTGGTGCGTGGAGTTGATAACGAGAAAGAAGGACATTAATGGATTTGAGTTCTGCAGAGGGATGGACATCGTCAGTTGGGTGAAGTCCCATGCTGCTGAGGATTATGTTAATTCCGTGGTGGATGAAGGGCTGCGAGATGAATTAATTGAATCGCAAGCAAAATCAGAGATTATGGGTACAATTCGAATTGCATTGCAATGCACGGCTGCCAAGGCAGAGGAGAGGCCAAGCATGAGAAAAGTGGTACAAATGCTCAGAGCGCTGAGACCTGTGAAGCCAATAAAAAGAAATTCAGATGCAAAAGGTAAAGTCGTTGTCGGGGGACCATCCACCCCTGCCTGA___AGAAATGAGATGAGTGTGTGAAGAGATAGCACATGTGATGCGGAGCCA

Fln Alignment:

sp_v1.1_unigene54955___SMRKVVQMLRALRPVKPIKRNSDAKGKVVVGGPSTPA*RNEMS
D5A947_______________SMRQVVEMLRALRPVNPISRNSNTKGKVVLGEPSTPGGRNVMS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
202	66		33	0.997454
239	33		66	0.997454
255	33	66		0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain