SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54928

Length: 274 nt

UniGene Fasta

>sp_v1.1_unigene54928
CGTCGTGACCTTGGCTGTCACTCATGGCAGGAAGTTGTTGTTAATGGTCAGGATAAAGCGTACAAAGATGTGATTGAACCCTTAGAAAGTGTTAGCATCACTATTGTACCAACAAGTAAAACAGATATCCATGAACTTGGACCACCAGAGCAGGTGGCTGAGACTTTAATTAGAAAGGTTTTGTCTCCTCCATCTCAAAAAACAAAGCTGTTAAATGTAAAAGAGCGCACAGCTGAAGGCAAGATCTATTACACTTTCGAGTTTGTCGCCCAGG

Ace file of the UniGene sp_v1.1_unigene54928

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative; K02717 photosystem II oxygen-evolving enhancer protein 2	-	-	5.0e-27	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	family expressed	-	-	9.05679e-39	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	9.05679e-39	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	9.05679e-39	82%
Blast2go	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	9.05679e-39	82%
Blast2go	Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich	IPR016124	-	9.05679e-39	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN18

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 91 - 239

Fln protein: RRDLGCHSWQEVVVNGQDKAYKDVIEPLESVSITIVPTSKTDIHELGPPEQVAETLIRKVLSPPSQKTKLLNVKERTAEGKIYYTFEFVAQ

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGCAGGAAGTTGTTGTTAATGGTCAGGATAAAGCGTACAAAGATGTGATTGAACCCTTAGAAAGTGTTAGCATCACTATTGTACCAACAAGTAAAACAGATATCCATGAACTTGGACCACCAGAGCAGGTGGCTGAGACTTTAATTAGAAAGGTTTTGTCTCCTCCATCTCAAAAAACAAAGCTGTTAAATGTAAAAGAGCGCACAGCTGAAGGCAAGATCTATTACACTTTCGAGTTTGTCGCCCAGG

Fln Alignment:

sp_v1.1_unigene54928___WQEVVVNGQDKAYKDVIEPLESVSITIVPTSKTDIHELGPPEQVAETLIRKVLSPPSQKTKLLNVKERTAEGKIYYTFEFVAQ
A9NN18_______________WQEVVVNGQDKAYKDVIEPLESVSITIVPTSKTDIHELGPPEQVAETLVRKVLSSPSQKTKLLNVKERTAEGKIYYTFEFVAQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
124	66		33	0.997452
126	75	25		0.996486
127		25	75	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain