SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54901

Length: 338 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene54901
CGGGCTCGCATTCGTGGTGGTACCAGATGAACTGACCGTTGGTCGCCCTGGAGGATGGTTGGGGATGCTCAATGATGCCTGCGATGAAACTTATAAGGCCTTCGCAGTGGAATTCGATACATTCAAGAACACTGAATTTGGAGATCCTAATGACAACCATGTTGGCATTAATTTAGGAAGCATAGTGTCCAACATAACCCTTGATGCTGCTGATGCAGGGGTGTCCCTCAAAAGTGGCTCCAATGTCCGAGCGTGGATTAAGTACGATGGCTTTAAGCGATGGATAGAGCTAAGTCTTGCTAAAGATGGCGATGATATGCCAAGCAAGCCACTCTACT

Ace file of the UniGene sp_v1.1_unigene54901 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9S0T8_RICCO	-	-	1.0e-35	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	serine-threonine protein plant-	-	-	2.07691e-35	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Legume lectin domain	IPR001220	-	2.07691e-35	64%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	2.07691e-35	64%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	2.07691e-35	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: Distance to subject end: 474 aas, your sequence is shorter than subject: 112 - 704

Fln protein: GLAFVVVPDELTVGRPGGWLGMLNDACDETYKAFAVEFDTFKNTEFGDPNDNHVGINLGSIVSNITLDAADAGVSLKSGSNVRAWIKYDGFKRWIELSLAKDGDDMPSKPLY

Protein Length: 113

Fln nts: CGGGCTCGCATTCGTGGTGGTACCAGATGAACTGACCGTTGGTCGCCCTGGAGGATGGTTGGGGATGCTCAATGATGCCTGCGATGAAACTTATAAGGCCTTCGCAGTGGAATTCGATACATTCAAGAACACTGAATTTGGAGATCCTAATGACAACCATGTTGGCATTAATTTAGGAAGCATAGTGTCCAACATAACCCTTGATGCTGCTGATGCAGGGGTGTCCCTCAAAAGTGGCTCCAATGTCCGAGCGTGGATTAAGTACGATGGCTTTAAGCGATGGATAGAGCTAAGTCTTGCTAAAGATGGCGATGATATGCCAAGCAAGCCACTCTACT

Fln Alignment:

sp_v1.1_unigene54901___GLAFVVVPDELTVGR-PGGWLGMLNDACD-ETYK-AFAVEFDTFKNTEFGDPNDNHVGINLGSIVSNITLDAA------DAGVSLKSGSNVRAWIKYDGFKRWIELSLAKDGDDMPSKPL
B8LLJ6_______________GLAFVMTPYTSSMGALPAQHLGLLNLTSNGQPYNHLFAVEFDTTKNVEFNDPDGNHVGVDINNLVSVETITAGYWNGEEFHNLSLKSGRNIQAWIDYDHLQTRLNVCITVAGLPRPRRPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain