SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54897

Length: 258 nt

UniGene Fasta

>sp_v1.1_unigene54897
CGTCGTGACCTTGGCTGTCACTCAGCTGTACAGAATCCTTTCTGCGTGACATTGTCATGGAGGAGTTCCATCAGATAGAGCCAGAAAGTCAAACAAAGCAGAAAATGTTGGGCATTTTGAAACGCTTCCACTCAGAAAATGAAGATGACACCAGTGAAATTGAAGAAAGTAATGAAGATGACTTTCCACTTTCTGCGGAGACAATCCAAAAAATAGCTGAAGGAGATGATATGTCATTGGATGACTTATCAGCCAATG

Ace file of the UniGene sp_v1.1_unigene54897

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RYR9_RICCO	-	-	3.0e-16	55%
FL-Next	tr=Zinc finger protein, putative; Ricinus communis (Castor bean).	-	-	0.0	55%
Blast2go	zinc finger	-	-	6.42792e-16	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RYR9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 281 aas, your sequence is shorter than subject: 85 - 411

Fln protein: S*PWLSLSCTESFLRDIVMEEFHQIEPESQTKQKMLGILKRFHSENEDDTSEIEESNEDDFPLSAETIQKIAEGDDMSLDDLSAN

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTGTACAGAATCCTTTCTGCGTGACATTGTCATGGAGGAGTTCCATCAGATAGAGCCAGAAAGTCAAACAAAGCAGAAAATGTTGGGCATTTTGAAACGCTTCCACTCAGAAAATGAAGATGACACCAGTGAAATTGAAGAAAGTAATGAAGATGACTTTCCACTTTCTGCGGAGACAATCCAAAAAATAGCTGAAGGAGATGATATGTCATTGGATGACTTATCAGCCAATG

Fln Alignment:

sp_v1.1_unigene54897___SLSCTESFLRDIVMEEFHQIEPESQTKQKMLGILKRFHSENEDDTSEIEESNEDDFPLSAETIQKIAEGDDMSLDDLSA
B9RYR9_______________SLRCTESFMRENVVEELRLMQPEDESKQKMLDILKRFHSQ-----EEMESMDEDDCHLSEETVQKVLSGDSMSFEDLSA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain