SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54848

Length: 254 nt

UniGene Fasta

>sp_v1.1_unigene54848
ATGGGCAGATGGACAAACTGCTTTTTGAGGAAGGTGGAGTTACCAAATCTCTTGTGGCTCAGATGGAGAGAGTGTCCCCACTCGACCCTGCCTTCCTGGGTTGGTGTGAAGAATTTAAAGTATCTAGATGTGTCGTACAGCGAATTAAACACACTGTGGGAAAGGGAAGGCGAATTACAGGAACCCCTCGAGTTCCAGGAATCTTTGGAGTTTGGGTGCTCTGAGCTAGAGGAGCTGCCATGTGTGGCAGCATT

Ace file of the UniGene sp_v1.1_unigene54848

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J5_PINTA	-	-	3.0e-05	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	unknown [Picea sitchensis]	-	-	1.34965e-13	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 84 - 653

Fln protein: MGRWTNCFLRKVELPNLLWLRWRECPHSTLPSWVGVKNLKYLDVSYSELNTLWEREGELQEPLEFQESLEFGCSELEELPCVAA

Protein Length: 85

Fln nts: ATGGGCAGATGGACAAACTGCTTTTTGAGGAAGGTGGAGTTACCAAATCTCTTGTGGCTCAGATGGAGAGAGTGTCCCCACTCGACCCTGCCTTCCTGGGTTGGTGTGAAGAATTTAAAGTATCTAGATGTGTCGTACAGCGAATTAAACACACTGTGGGAAAGGGAAGGCGAATTACAGGAACCCCTCGAGTTCCAGGAATCTTTGGAGTTTGGGTGCTCTGAGCTAGAGGAGCTGCCATGTGTGGCAGCATT

Fln Alignment:

sp_v1.1_unigene54848___LRKVELPNLLWLRWRECPHSTLPSWVGVKNLKYLDVSYSELNTLWEREGELQEPLEFQESLE
B8LMX8_______________LMKVKLPNLLWFHWEKCPHSSLPAWVPIKNLRVLQVSHRRLNTMSFGEGEPQASLQLPESLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain