SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54804

Length: 338 nt

UniGene Fasta

>sp_v1.1_unigene54804
GATTCTTCAGCTGGGTACCGGGGAGGCAATCAGGTGGCCTGCAGGCTTACAGGTAATTTGTCCCCGTTTGTTGGAAATTTGACAGAGTTGCGCATTTTATCGCTGCCTTATAATGCAATCTCTGGAGAGATTCCAAGAGAGATCGCAAAAACTAAGGGCTCTGGAAATACTTGAACTTCAGGACAATTCTTTTACTGGCCAAATTCTGTCAGAATTAAAGGACTTGAGTTCCTTACGCGTGCTCAACCTTGGGTATAATTCTCTTACTGGAAGCATTCCTACGGAGCTTGGCAGATGTCACAAATTACAAATATTAAATCTAGCAGGAAACATGCTAA

Ace file of the UniGene sp_v1.1_unigene54804

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:1.3.1.74 2.7.11.22)	-	-	2.0e-14	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	atp binding	-	-	1.23005e-17	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	radial axis specification	GO:0009945	Biological Process	1.23005e-17	65%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	1.23005e-17	65%
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.23005e-17	65%
Blast2go	response to cold	GO:0009409	Biological Process	1.23005e-17	65%
Blast2go	embryonic meristem development	GO:0048508	Biological Process	1.23005e-17	65%
Blast2go	anther development	GO:0048653	Biological Process	1.23005e-17	65%
Blast2go	pollen germination	GO:0009846	Biological Process	1.23005e-17	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.23005e-17	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 576 aas, your sequence is shorter than subject: 113 - 818

Fln protein: DSSAGYRGGNQVACRLTGNLSPFVGNLTELRILSLPYNAISGEIPRExxxKLRALEILELQDNSFTGQILSELKDLSSLRVLNLGYNSLTGSIPTELGRCHKLQILNLAGNML

Protein Length: 114

Fln nts: GATTCTTCAGCTGGGTACCGGGGAGGCAATCAGGTGGCCTGCAGGCTTACAGGTAATTTGTCCCCGTTTGTTGGAAATTTGACAGAGTTGCGCATTTTATCGCTGCCTTATAATGCAATCTCTGGAGAGATTCCAAGAGAGATxxxxxxAAAACTAAGGGCTCTGGAAATACTTGAACTTCAGGACAATTCTTTTACTGGCCAAATTCTGTCAGAATTAAAGGACTTGAGTTCCTTACGCGTGCTCAACCTTGGGTATAATTCTCTTACTGGAAGCATTCCTACGGAGCTTGGCAGATGTCACAAATTACAAATATTAAATCTAGCAGGAAACATGCTAA

Fln Alignment:

sp_v1.1_unigene54804___LTGNLSPFVGNLTELRILSLPYNAISGEIPREIxxKLRALEILELQDNSFTGQILSELKDLSSLRVLNLGYNSLTGSIPTELGRCHKLQILNLAGNML
B8LQX6_______________LTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALxxQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain