SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene54799

Length: 364 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene54799
CAAGAATTGTAGCGAACGATCTGAACGTGTTGAAGAAATGGGTCGGCATATAATTGAGAGTGTGAATGCCAAATTCACTAGTGATGCCAGCTTCAATTCCTTCATGCTTCAACAAATAAGCACAATTCAACTCTTTCATAGCTCCATTGATGGGTTGCATGATACTACAATGGGTGAACAATCCACCAGTATCTGCAACTCCCAAATCCCGGGTATACCCAGCTTTGTAGTGGGTTTGAATATTCCTGTCGATGATGTGAAACAAATCCTATTCCAGAATGAAGTTAATATCGTTGGGGTCGAAGGGATGGGTGGAAGCGGCAAAACCACCCTTGCATTAGCCCTTTGCAATGATCTTCAAGTC

Ace file of the UniGene sp_v1.1_unigene54799

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	3.0e-09	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	unknown [Picea sitchensis]	-	-	2.72472e-19	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NB-ARC	IPR002182	-	2.72472e-19	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS7

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 121 - 379

Fln protein: KNCSERSERVEEMGRHIIESVNAKFTSDASFNSFMLQQISTIQLFHSSIDGLHDTTMGEQSTSICNSQIPGIPSFVVGLNIPVDDVKQILFQNEVNIVGVEGMGGSGKTTLALALCNDLQV

Protein Length: 122

Fln nts: CAAGAATTGTAGCGAACGATCTGAACGTGTTGAAGAAATGGGTCGGCATATAATTGAGAGTGTGAATGCCAAATTCACTAGTGATGCCAGCTTCAATTCCTTCATGCTTCAACAAATAAGCACAATTCAACTCTTTCATAGCTCCATTGATGGGTTGCATGATACTACAATGGGTGAACAATCCACCAGTATCTGCAACTCCCAAATCCCGGGTATACCCAGCTTTGTAGTGGGTTTGAATATTCCTGTCGATGATGTGAAACAAATCCTATTCCAGAATGAAGTTAATATCGTTGGGGTCGAAGGGATGGGTGGAAGCGGCAAAACCACCCTTGCATTAGCCCTTTGCAATGATCTTCAAGTC

Fln Alignment:

sp_v1.1_unigene54799___MLQQISTIQLFHSSIDGLHDTTMGEQSTSICNSQIPGIPSFVVGLNIPVDDVKQILFQNEVNIVGVEGMGGSGKTTLALALCNDLQV
B8LNS7_______________ILQNINPTQLSQIPIDGIHGATAAQMSNSF-NSQVPDMPNEVVGLYKPINDVKQILRRSDVNIVGITGMGGSGKTTLASALCNDPEV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain